Gm3896 Gene Detail

Summary

• Symbol
  Gm3896
• Name
  predicted gene 3896

• Feature Type
  lncRNA gene
• IDs
  MGI:3782069
  NCBI Gene: 100042545
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:36927054-36931967 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 20.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  191 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782069	lncRNA gene	Chr9:36927054-36931967 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004617	antisense lncRNA gene	Chr9:34959721-34964632 (+)
A/J	MGP_AJ_G0004597	antisense lncRNA gene	Chr9:34046521-34051463 (+)
AKR/J	MGP_AKRJ_G0004581	antisense lncRNA gene	Chr9:34802482-34807390 (+)
BALB/cJ	MGP_BALBcJ_G0004582	antisense lncRNA gene	Chr9:33885384-33890295 (+)
C3H/HeJ	MGP_C3HHeJ_G0004531	antisense lncRNA gene	Chr9:35228160-35233070 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004731	antisense lncRNA gene	Chr9:36091913-36096826 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004182	antisense lncRNA gene	Chr9:33167312-33172427 (+)
CAST/EiJ	MGP_CASTEiJ_G0004489	antisense lncRNA gene	Chr9:34916642-34921551 (+)
CBA/J	MGP_CBAJ_G0004525	antisense lncRNA gene	Chr9:37349847-37354755 (+)
DBA/2J	MGP_DBA2J_G0004540	antisense lncRNA gene	Chr9:34104682-34109590 (+)
FVB/NJ	MGP_FVBNJ_G0004557	antisense lncRNA gene	Chr9:33351015-33355932 (+)
LP/J	MGP_LPJ_G0004621	antisense lncRNA gene	Chr9:35192758-35197679 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004546	antisense lncRNA gene	Chr9:38968398-38973313 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004731	antisense lncRNA gene	Chr9:34731847-34736768 (+)
PWK/PhJ	MGP_PWKPhJ_G0004442	antisense lncRNA gene	Chr9:34003514-34008464 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004382	antisense lncRNA gene	Chr9:34939081-34944054 (+)
WSB/EiJ	MGP_WSBEiJ_G0004530	antisense lncRNA gene	Chr9:34536554-34541468 (+)

Homology

• Gene Tree
  Gm3896
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000093721 (Evidence)
• NCBI Gene
  100042545

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093721	Ensembl Gene Model | MGI Sequence Detail	4914	C57BL/6J
transcript	ENSMUST00000176020	Ensembl | MGI Sequence Detail	4094	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;