Gm4045 Pseudogene Detail

Summary

• Symbol
  Gm4045
• Name
  predicted gene 4045

• Feature Type
  pseudogene
• IDs
  MGI:3782220
  NCBI Gene: 100042816
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:66723001-66723310 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 30.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782220	pseudogene	Chr6:66722947-66723392 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013919	pseudogene	Chr7:63565139-63565387 (+)
A/J	MGP_AJ_G0013938	pseudogene	Chr7:62353535-62354564 (+)
AKR/J	MGP_AKRJ_G0013872	pseudogene	Chr7:63670535-63670843 (+)
BALB/cJ	MGP_BALBcJ_G0013894	pseudogene	Chr7:62039715-62040023 (+)
C3H/HeJ	MGP_C3HHeJ_G0010049	pseudogene	Chr1:54654431-54659177 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0012572	pseudogene	ChrX:31836691-31836962 (+)
CAST/EiJ	MGP_CASTEiJ_G0009883	pseudogene	Chr1:53932615-53932888 (-)
CBA/J	MGP_CBAJ_G0010019	pseudogene	Chr1:58780509-58780817 (-)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013863	pseudogene	Chr7:64755655-64755924 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0014287	pseudogene	Chr7:62939464-62940175 (+)
PWK/PhJ	MGP_PWKPhJ_G0009786	pseudogene	Chr1:51758759-51759032 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013410	pseudogene	ChrX:22255609-22255881 (+)
WSB/EiJ	MGP_WSBEiJ_G0009947	pseudogene	Chr1:54047168-54047441 (-)

Homology

• Gene Tree
  Gm4045
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000108231 (Evidence)
• NCBI Gene
  100042816

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108231	Ensembl Gene Model | MGI Sequence Detail	310	C57BL/6J
transcript	ENSMUST00000204076	Ensembl | MGI Sequence Detail	310	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;