Rpl10-ps6 Pseudogene Detail

Summary

• Symbol
  Rpl10-ps6
• Name
  ribosomal protein L10, pseudogene 6
• Synonyms
  Gm4167

• Feature Type
  pseudogene
• IDs
  MGI:3782343
  NCBI Gene: 100043010
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:37272554-37273195 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 32.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782343	pseudogene	Chr19:37272492-37273236 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013005	pseudogene	Chr5:20519404-20519990 (-)
A/J	MGP_AJ_G0012994	pseudogene	Chr5:19864252-19864840 (-)
AKR/J	MGP_AKRJ_G0012958	pseudogene	Chr5:20627177-20627765 (-)
BALB/cJ	MGP_BALBcJ_G0012972	pseudogene	Chr5:20340331-20340917 (-)
C3H/HeJ	MGP_C3HHeJ_G0012824	pseudogene	Chr5:20716820-20717408 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0011529	pseudogene	Chr5:17864993-17865568 (-)
CAST/EiJ	MGP_CASTEiJ_G0012553	pseudogene	Chr5:20025044-20025632 (-)
CBA/J	MGP_CBAJ_G0012792	pseudogene	Chr5:22299828-22300416 (-)
DBA/2J	MGP_DBA2J_G0012867	pseudogene	Chr5:20161225-20161811 (-)
FVB/NJ	MGP_FVBNJ_G0012871	pseudogene	Chr5:19559313-19559899 (-)
LP/J	MGP_LPJ_G0012937	pseudogene	Chr5:20926649-20927235 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012886	pseudogene	Chr5:23504576-23505162 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013332	pseudogene	Chr5:20237323-20237909 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012592	pseudogene	Chr5:20336016-20336602 (-)

Homology

• Gene Tree
  Rpl10-ps6
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000080885 (Evidence)
• NCBI Gene
  100043010

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080885	Ensembl Gene Model | MGI Sequence Detail	642	C57BL/6J
transcript	ENSMUST00000121321	Ensembl | MGI Sequence Detail	642	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl10-ps6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159081	Chr19:37273237-37273244 (-)	-46 bp