Gm4258 MGI Mouse Gene Detail - MGI:3782435

Symbol

Gm4258
Name

predicted gene 4258

Feature Type

lncRNA gene
IDs

MGI:3782435
NCBI Gene: 100043143
Alliance

gene page
Transcription Start Sites

15 TSS

Sequence Map

Chr1:137826161-137890514 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, Syntenic
Mapping Data

1 experiment

SNPs within 2kb

1709 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782435	lncRNA gene	Chr1:137826161-137937516 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015115	unclassified non-coding RNA gene	Chr1:141894282-142002291 (+)
A/J	MGP_AJ_G0015088	unclassified non-coding RNA gene	Chr1:136411517-136509472 (+)
AKR/J	MGP_AKRJ_G0015051	unclassified non-coding RNA gene	Chr1:140502033-140616251 (+)
BALB/cJ	MGP_BALBcJ_G0015051	unclassified non-coding RNA gene	Chr1:136743755-136844683 (+)
C3H/HeJ	MGP_C3HHeJ_G0014874	unclassified non-coding RNA gene	Chr1:140598440-140707902 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015508	unclassified non-coding RNA gene	Chr1:146889030-146999910 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013254	unclassified non-coding RNA gene	Chr1:129466267-129564634 (+)
CAST/EiJ	MGP_CASTEiJ_G0014429	unclassified non-coding RNA gene	Chr1:139757811-139865841 (+)
CBA/J	MGP_CBAJ_G0014853	unclassified non-coding RNA gene	Chr1:151945292-152062649 (+)
DBA/2J	MGP_DBA2J_G0014946	unclassified non-coding RNA gene	Chr1:135394868-135497708 (+)
FVB/NJ	MGP_FVBNJ_G0014958	unclassified non-coding RNA gene	Chr1:134049975-134150364 (+)
LP/J	MGP_LPJ_G0015029	unclassified non-coding RNA gene	Chr1:143006634-143110147 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014985	unclassified non-coding RNA gene	Chr1:157594844-157728872 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015546	unclassified non-coding RNA gene	Chr1:140274300-140382829 (+)
PWK/PhJ	MGP_PWKPhJ_G0014221	unclassified non-coding RNA gene	Chr1:134480889-134581372 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014010	unclassified non-coding RNA gene	Chr1:139264970-139367431 (+)
WSB/EiJ	MGP_WSBEiJ_G0014532	unclassified non-coding RNA gene	Chr1:140299943-140410494 (+)

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Gene Tree

Gm4258

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

3
Chemically induced (other)

2
Radiation induced

1
Genomic Mutations

3 involving Gm4258
Find Mice (IMSR)

2 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

720
Tissues

14
cDNA Data

3
Literature Summary

1

Images

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

32
RefSeq

4

Ensembl

ENSMUSG00000098243 (Evidence)
NCBI Gene

100043143

Representative Sequences				Length	Strain/Species	Flank
	genomic	100043143	NCBI Gene Model \| MGI Sequence Detail	64354	C57BL/6J	± kb
	transcript	AK040453	GenBank \| ENA \| DDBJ \| MGI Sequence Detail	3068	C57BL/6J

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All nucleic 3

cDNA 3

Summaries

All 11

Developmental Gene Expression 1

Phenotypes 4
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm4258:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9105	Chr1:137828918-137828928 (+)	2,762 bp
Tssr9106	Chr1:137833768-137833797 (+)	7,622 bp
Tssr9107	Chr1:137833824-137833835 (+)	7,669 bp
Tssr9108	Chr1:137834499-137834508 (+)	8,343 bp
Tssr9109	Chr1:137834521-137834530 (+)	8,365 bp
Tssr9110	Chr1:137834543-137834563 (+)	8,392 bp
Tssr9111	Chr1:137834581-137834595 (+)	8,427 bp
Tssr9112	Chr1:137834764-137834765 (+)	8,604 bp
Tssr9115	Chr1:137844311-137844318 (+)	18,154 bp
Tssr9116	Chr1:137846511-137846519 (+)	20,354 bp
Tssr9117	Chr1:137848421-137848432 (+)	22,266 bp
Tssr9118	Chr1:137848625-137848638 (+)	22,471 bp
Tssr9126	Chr1:137870894-137870926 (+)	44,749 bp
Tssr9127	Chr1:137873743-137873747 (+)	47,584 bp
Tssr9130	Chr1:137889208-137889215 (+)	63,051 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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