Gm4535 Pseudogene Detail

Summary

• Symbol
  Gm4535
• Name
  predicted gene 4535

• Feature Type
  pseudogene
• IDs
  MGI:3782719
  NCBI Gene: 100043585
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:140986550-140987107 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 86.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782719	pseudogene	Chr7:140986428-140987239 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011283	pseudogene	Chr16:42006775-42007300 (+)
A/J	MGP_AJ_G0011445	pseudogene	Chr18:50089810-50090368 (+)
AKR/J	MGP_AKRJ_G0011409	pseudogene	Chr18:51491082-51491640 (+)
BALB/cJ	MGP_BALBcJ_G0011424	pseudogene	Chr18:50278878-50279930 (+)
C3H/HeJ	MGP_C3HHeJ_G0011309	pseudogene	Chr18:51625325-51626849 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011714	pseudogene	Chr18:53850362-53850920 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011690	pseudogene	Chr5:91749152-91749709 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011285	pseudogene	Chr18:55434358-55434916 (+)
DBA/2J	MGP_DBA2J_G0011339	pseudogene	Chr18:49803505-49804063 (+)
FVB/NJ	MGP_FVBNJ_G0011344	pseudogene	Chr18:49218954-49219512 (+)
LP/J	MGP_LPJ_G0011407	pseudogene	Chr18:52130566-52131124 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011337	pseudogene	Chr18:57183873-57184431 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011700	pseudogene	Chr18:51515181-51516843 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm4535
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm4535
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1
• CCDS
  CCDS52443.1

• Ensembl
  ENSMUSG00000091083 (Evidence)
• NCBI Gene
  100043585

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091083	Ensembl Gene Model | MGI Sequence Detail	558	C57BL/6J
transcript	ENSMUST00000182274	Ensembl | MGI Sequence Detail	558	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:187438 Peters J, et al., Identification and characterisation of imprinted genes in the mouse. Brief Funct Genomic Proteomic. 2004 Feb;2(4):320-33