Gm4734 Pseudogene Detail

Summary

• Symbol
  Gm4734
• Name
  predicted gene 4734

• Feature Type
  pseudogene
• IDs
  MGI:3782914
  NCBI Gene: 102639109
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:109799501-109800277 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 59.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782914	pseudogene	Chr9:109798183-109800352 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014257	pseudogene	Chr9:112087922-112089125 (+)
A/J	MGP_AJ_G0014273	pseudogene	Chr9:108022429-108023517 (+)
AKR/J	MGP_AKRJ_G0014198	pseudogene	Chr9:110699822-110700609 (+)
BALB/cJ	MGP_BALBcJ_G0014223	pseudogene	Chr9:107763997-107765954 (+)
C3H/HeJ	MGP_C3HHeJ_G0014054	pseudogene	Chr9:111176627-111177420 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014676	pseudogene	Chr9:115128837-115129604 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0014036	pseudogene	Chr9:119418355-119419130 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0014119	pseudogene	Chr9:106310213-106311443 (+)
LP/J	MGP_LPJ_G0014211	pseudogene	Chr9:112386993-112387745 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014153	pseudogene	Chr9:120781993-120783047 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014646	pseudogene	Chr9:111014653-111015429 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm4734
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000106208 (Evidence)
• NCBI Gene
  102639109

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106208	Ensembl Gene Model | MGI Sequence Detail	777	C57BL/6J
transcript	ENSMUST00000200117	Ensembl | MGI Sequence Detail	777	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm4734:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87277	Chr9:109798039-109798050 (+)	-1,456 bp
Tssr87278	Chr9:109798072-109798099 (+)	-1,415 bp
Tssr87279	Chr9:109798100-109798105 (+)	-1,398 bp