Gm15491 Gene Detail

Summary

• Symbol
  Gm15491
• Name
  predicted gene 15491

• Feature Type
  lncRNA gene
• IDs
  MGI:3782937
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:45737947-45740756 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 38.75 cM

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782937	lncRNA gene	Chr19:45737947-45740756 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003484	antisense lncRNA gene	Chr19:45372246-45374955 (+)
A/J	MGP_AJ_G0003464	antisense lncRNA gene	Chr19:43153761-43156442 (+)
AKR/J	MGP_AKRJ_G0003443	antisense lncRNA gene	Chr19:44542575-44545377 (+)
BALB/cJ	MGP_BALBcJ_G0003453	antisense lncRNA gene	Chr19:43206608-43215113 (+)
C3H/HeJ	MGP_C3HHeJ_G0003401	antisense lncRNA gene	Chr19:44720879-44723591 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003591	antisense lncRNA gene	Chr19:46504184-46507715 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003101	antisense lncRNA gene	Chr19:42398180-42401042 (+)
CAST/EiJ	MGP_CASTEiJ_G0003364	antisense lncRNA gene	Chr19:44473818-44476627 (+)
CBA/J	MGP_CBAJ_G0003398	antisense lncRNA gene	Chr19:48840671-48844160 (+)
DBA/2J	MGP_DBA2J_G0003406	antisense lncRNA gene	Chr19:42961638-42964925 (+)
FVB/NJ	MGP_FVBNJ_G0003425	antisense lncRNA gene	Chr19:42755210-42758012 (+)
LP/J	MGP_LPJ_G0003479	antisense lncRNA gene	Chr19:45285972-45288745 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003413	antisense lncRNA gene	Chr19:48169276-48172913 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003594	antisense lncRNA gene	Chr19:44637349-44640151 (+)
PWK/PhJ	MGP_PWKPhJ_G0003320	antisense lncRNA gene	Chr19:42895348-42898187 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003265	antisense lncRNA gene	Chr19:43316570-43319395 (+)
WSB/EiJ	MGP_WSBEiJ_G0003399	antisense lncRNA gene	Chr19:44785219-44789533 (+)

Homology

• Gene Tree
  Gm15491
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  3
• Targeted
  1
• Genomic Mutations
  1 involving Gm15491
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087367 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087367	Ensembl Gene Model | MGI Sequence Detail	2810	C57BL/6J
transcript	ENSMUST00000133963	Ensembl | MGI Sequence Detail	758	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:196292 Marinic M, et al., An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape. Dev Cell. 2013 Mar 11;24(5):530-42

TSS for Gm15491:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156698	Chr19:45737638-45737667 (+)	-294 bp
Tssr156699	Chr19:45738047-45738070 (+)	112 bp