Gm15502 Pseudogene Detail

Summary

• Symbol
  Gm15502
• Name
  predicted gene 15502

• Feature Type
  pseudogene
• IDs
  MGI:3782949
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:137895014-137895221 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 76.90 cM

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782949	pseudogene	Chr5:137895014-137895221 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013286	pseudogene	Chr5:142686988-142687195 (-)
A/J	MGP_AJ_G0013266	pseudogene	Chr5:136476909-136477143 (-)
AKR/J	MGP_AKRJ_G0013232	pseudogene	Chr5:140921127-140921334 (-)
BALB/cJ	MGP_BALBcJ_G0013246	pseudogene	Chr5:137864531-137864765 (-)
C3H/HeJ	MGP_C3HHeJ_G0013095	pseudogene	Chr5:141571711-141571945 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013613	pseudogene	Chr5:147998216-147998423 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011760	pseudogene	Chr5:130694015-130694249 (-)
CAST/EiJ	MGP_CASTEiJ_G0012817	pseudogene	Chr5:140969939-140970173 (-)
CBA/J	MGP_CBAJ_G0013063	pseudogene	Chr5:153879892-153880126 (-)
DBA/2J	MGP_DBA2J_G0013146	pseudogene	Chr5:136406263-136406497 (-)
FVB/NJ	MGP_FVBNJ_G0013146	pseudogene	Chr5:135568580-135568814 (-)
LP/J	MGP_LPJ_G0013215	pseudogene	Chr5:143197911-143198145 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013163	pseudogene	Chr5:156690843-156691077 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013615	pseudogene	Chr5:140766847-140767056 (-)
PWK/PhJ	MGP_PWKPhJ_G0012630	pseudogene	Chr5:135466367-135466574 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012420	pseudogene	Chr5:138336088-138336322 (-)
WSB/EiJ	MGP_WSBEiJ_G0012854	pseudogene	Chr5:141487175-141487382 (-)

Homology

• Gene Tree
  Gm15502
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083813 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083813	Ensembl Gene Model | MGI Sequence Detail	208	C57BL/6J
transcript	ENSMUST00000121449	Ensembl | MGI Sequence Detail	208	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15502:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54059	Chr5:137896217-137896222 (-)	-999 bp