Gm15538 Pseudogene Detail

Summary

• Symbol
  Gm15538
• Name
  predicted gene 15538
• Synonyms
  EG664851

• Feature Type
  pseudogene
• IDs
  MGI:3782986
  NCBI Gene: 118568250
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:3744292-3744604 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 2.31 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  87 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782986	pseudogene	Chr16:3743930-3745326 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011221	pseudogene	Chr16:371018-371330 (+)
A/J	MGP_AJ_G0011210	pseudogene	Chr16:252745-253057 (+)
AKR/J	MGP_AKRJ_G0011172	pseudogene	Chr16:391812-392124 (+)
BALB/cJ	MGP_BALBcJ_G0011179	pseudogene	Chr16:375648-375960 (+)
C3H/HeJ	MGP_C3HHeJ_G0011078	pseudogene	Chr16:425321-425633 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011474	pseudogene	Chr16:407842-408154 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010059	pseudogene	Chr16:203832-204142 (+)
CAST/EiJ	MGP_CASTEiJ_G0010903	pseudogene	Chr16:379347-379659 (+)
CBA/J	MGP_CBAJ_G0011057	pseudogene	Chr16:476346-476658 (+)
DBA/2J	MGP_DBA2J_G0011105	pseudogene	Chr16:358202-358514 (+)
FVB/NJ	MGP_FVBNJ_G0011107	pseudogene	Chr16:328447-328759 (+)
LP/J	MGP_LPJ_G0011196	pseudogene	Chr16:382604-382916 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011101	pseudogene	Chr16:368210-368522 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011452	pseudogene	Chr16:354369-354681 (+)
PWK/PhJ	MGP_PWKPhJ_G0010777	pseudogene	Chr16:393362-393674 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010601	pseudogene	Chr16:457225-457530 (+)
WSB/EiJ	MGP_WSBEiJ_G0010949	pseudogene	Chr16:387316-387628 (+)

Homology

• Gene Tree
  Gm15538
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000083579 (Evidence)
• NCBI Gene
  118568250

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083579	Ensembl Gene Model | MGI Sequence Detail	313	C57BL/6J
transcript	ENSMUST00000121410	Ensembl | MGI Sequence Detail	313	Not Applicable

Other
Accession IDs

MGI:3643486

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15538:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr136841	Chr16:3744109-3744116 (+)	-179 bp