Gm15559 Gene Detail

Summary

• Symbol
  Gm15559
• Name
  predicted gene 15559

• Feature Type
  lncRNA gene
• IDs
  MGI:3783008
  NCBI Gene: 100504049
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:110918815-110927126 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 53.70 cM

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783008	lncRNA gene	Chr5:110918815-110927126 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004140	antisense lncRNA gene	Chr5:113249306-113259235 (+)
A/J	MGP_AJ_G0004119	antisense lncRNA gene	Chr5:108861657-108869980 (+)
AKR/J	MGP_AKRJ_G0004100	antisense lncRNA gene	Chr5:112310855-112319073 (+)
BALB/cJ	MGP_BALBcJ_G0004106	antisense lncRNA gene	Chr5:110232791-110241552 (+)
C3H/HeJ	MGP_C3HHeJ_G0004054	antisense lncRNA gene	Chr5:112749357-112757640 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004254	antisense lncRNA gene	Chr5:117700534-117708806 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003731	antisense lncRNA gene	Chr5:103696411-103704767 (+)
CAST/EiJ	MGP_CASTEiJ_G0004016	antisense lncRNA gene	Chr5:111622785-111630765 (+)
CBA/J	MGP_CBAJ_G0004048	antisense lncRNA gene	Chr5:122122919-122133527 (+)
DBA/2J	MGP_DBA2J_G0004063	antisense lncRNA gene	Chr5:108937384-108945623 (+)
FVB/NJ	MGP_FVBNJ_G0004080	antisense lncRNA gene	Chr5:107609533-107617820 (+)
LP/J	MGP_LPJ_G0004141	antisense lncRNA gene	Chr5:113804113-113812367 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004069	antisense lncRNA gene	Chr5:126772299-126781647 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004251	antisense lncRNA gene	Chr5:111760507-111768718 (+)
PWK/PhJ	MGP_PWKPhJ_G0003969	antisense lncRNA gene	Chr5:107517937-107527433 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003913	antisense lncRNA gene	Chr5:109226393-109234658 (+)
WSB/EiJ	MGP_WSBEiJ_G0004052	antisense lncRNA gene	Chr5:112234694-112242919 (+)

Homology

• Gene Tree
  Gm15559
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15559
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086401 (Evidence)
• NCBI Gene
  100504049

Representative Sequences			Length	Strain/Species
genomic	100504049	NCBI Gene Model | MGI Sequence Detail	8312	C57BL/6J
transcript	NR_152254	RefSeq | MGI Sequence Detail	2260	ZRU/MplStud

Molecular
Reagents

• All nucleic 8

  cDNA 8

References

• Summaries
  All 15

  Phenotypes 7
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14