Gm15583 Pseudogene Detail

Summary

• Symbol
  Gm15583
• Name
  predicted gene 15583

• Feature Type
  pseudogene
• IDs
  MGI:3783031
  NCBI Gene: 100043240
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:146601319-146604828 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 63.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783031	pseudogene	Chr1:146601319-146604828 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0011258	pseudogene	Chr16:32899922-32916788 (-)
AKR/J	MGP_AKRJ_G0011221	pseudogene	Chr16:34051579-34057408 (-)
BALB/cJ	MGP_BALBcJ_G0013793	pseudogene	Chr7:11356052-11359622 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0014189	pseudogene	Chr7:12033887-12037952 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013595	pseudogene	Chr7:12246160-12260943 (-)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013687	pseudogene	Chr7:11945211-11953270 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014164	pseudogene	Chr7:10908316-10911903 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm15583
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm15583
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10

• Ensembl
  ENSMUSG00000080078 (Evidence)
• NCBI Gene
  100043240

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080078	Ensembl Gene Model | MGI Sequence Detail	3510	C57BL/6J
transcript	ENSMUST00000116191	Ensembl | MGI Sequence Detail	3510	Not Applicable

Other
Accession IDs

MGI:3782488

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;