Gm15634 Gene Detail

Summary

• Symbol
  Gm15634
• Name
  predicted gene 15634

• Feature Type
  lncRNA gene
• IDs
  MGI:3783078
  NCBI Gene: 118567567
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:46605642-46609137 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 26.16 cM

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783078	lncRNA gene	Chr8:46605515-46609289 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004555	antisense lncRNA gene	Chr8:45246578-45250067 (+)
A/J	MGP_AJ_G0004535	antisense lncRNA gene	Chr8:43486730-43490217 (+)
AKR/J	MGP_AKRJ_G0004519	antisense lncRNA gene	Chr8:44770251-44773744 (+)
BALB/cJ	MGP_BALBcJ_G0004520	antisense lncRNA gene	Chr8:43673008-43676498 (+)
C3H/HeJ	MGP_C3HHeJ_G0004469	antisense lncRNA gene	Chr8:45306851-45310350 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004670	antisense lncRNA gene	Chr8:46951247-46954738 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004122	antisense lncRNA gene	Chr8:39759127-39762666 (+)
CAST/EiJ	MGP_CASTEiJ_G0004429	antisense lncRNA gene	Chr8:44743862-44747336 (+)
CBA/J	MGP_CBAJ_G0004463	antisense lncRNA gene	Chr8:48849552-48853051 (+)
DBA/2J	MGP_DBA2J_G0004479	antisense lncRNA gene	Chr8:43300845-43304334 (+)
FVB/NJ	MGP_FVBNJ_G0004495	antisense lncRNA gene	Chr8:42793541-42797031 (+)
LP/J	MGP_LPJ_G0004559	antisense lncRNA gene	Chr8:45249698-45253181 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004484	antisense lncRNA gene	Chr8:48919705-48923188 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004669	antisense lncRNA gene	Chr8:44932818-44936307 (+)
PWK/PhJ	MGP_PWKPhJ_G0004381	antisense lncRNA gene	Chr8:42825482-42829054 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004323	antisense lncRNA gene	Chr8:44088555-44092042 (+)
WSB/EiJ	MGP_WSBEiJ_G0004468	antisense lncRNA gene	Chr8:45189030-45192511 (+)

Homology

• Gene Tree
  Gm15634
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15634
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000086279 (Evidence)
• NCBI Gene
  118567567

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086279	Ensembl Gene Model | MGI Sequence Detail	3496	C57BL/6J
transcript	ENSMUST00000147206	Ensembl | MGI Sequence Detail	492	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15634:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77182	Chr8:46604786-46604818 (+)	-840 bp
Tssr77183	Chr8:46604893-46604902 (+)	-744 bp
Tssr77184	Chr8:46605671-46605685 (+)	36 bp