Gm15638 Gene Detail

Summary

• Symbol
  Gm15638
• Name
  predicted gene 15638
• Synonyms
  Gm41457

• Feature Type
  lncRNA gene
• IDs
  MGI:3783082
  NCBI Gene: 100503378
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:45765969-45791733 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 30.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1076 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783082	lncRNA gene	Chr16:45765926-45791733 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003352	antisense lncRNA gene	Chr16:44751860-44777506 (+)
A/J	MGP_AJ_G0003328	antisense lncRNA gene	Chr16:42752889-42778622 (+)
AKR/J	MGP_AKRJ_G0003311	antisense lncRNA gene	Chr16:44149708-44175456 (+)
BALB/cJ	MGP_BALBcJ_G0003317	antisense lncRNA gene	Chr16:42772369-42798096 (+)
C3H/HeJ	MGP_C3HHeJ_G0003270	antisense lncRNA gene	Chr16:44306405-44332093 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003458	antisense lncRNA gene	Chr16:45773358-45799083 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002976	antisense lncRNA gene	Chr16:43105592-43131902 (+)
CAST/EiJ	MGP_CASTEiJ_G0003234	antisense lncRNA gene	Chr16:44511345-44538423 (+)
CBA/J	MGP_CBAJ_G0003267	antisense lncRNA gene	Chr16:47682391-47710834 (+)
DBA/2J	MGP_DBA2J_G0003272	antisense lncRNA gene	Chr16:42484994-42511022 (+)
FVB/NJ	MGP_FVBNJ_G0003291	antisense lncRNA gene	Chr16:42397167-42423307 (+)
LP/J	MGP_LPJ_G0003345	antisense lncRNA gene	Chr16:44504451-44530188 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003280	antisense lncRNA gene	Chr16:47094251-47120696 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003461	antisense lncRNA gene	Chr16:44169656-44195318 (+)
PWK/PhJ	MGP_PWKPhJ_G0003194	antisense lncRNA gene	Chr16:42858163-42884064 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003137	antisense lncRNA gene	Chr16:44097871-44123433 (+)
WSB/EiJ	MGP_WSBEiJ_G0003268	antisense lncRNA gene	Chr16:44263040-44289617 (+)

Homology

• Gene Tree
  Gm15638
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2

• Ensembl
  ENSMUSG00000085826 (Evidence)
• NCBI Gene
  100503378

Representative Sequences			Length	Strain/Species
genomic	100503378	NCBI Gene Model | MGI Sequence Detail	25765	C57BL/6J
transcript	NR_152226	RefSeq | MGI Sequence Detail	2945	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  cDNA 4

Other
Accession IDs

MGI:5624342

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm15638:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138636	Chr16:45765947-45766004 (+)	7 bp