Gm15672 Gene Detail

Summary

• Symbol
  Gm15672
• Name
  predicted gene 15672

• Feature Type
  lncRNA gene
• IDs
  MGI:3783114
  NCBI Gene: 105242543
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:139133331-139136448 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 78.01 cM

Strain
Comparison

• SNPs within 2kb
  207 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783114	lncRNA gene	Chr5:139133331-139136448 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015616	unclassified non-coding RNA gene	Chr5:144095894-144099011 (-)
A/J	MGP_AJ_G0015592	unclassified non-coding RNA gene	Chr5:137998249-138001366 (-)
AKR/J	MGP_AKRJ_G0015556	unclassified non-coding RNA gene	Chr5:142301914-142305031 (-)
BALB/cJ	MGP_BALBcJ_G0015554	unclassified non-coding RNA gene	Chr5:139244057-139247174 (-)
C3H/HeJ	MGP_C3HHeJ_G0015376	unclassified non-coding RNA gene	Chr5:143071338-143074455 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016008	unclassified non-coding RNA gene	Chr5:149413335-149416452 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013742	unclassified non-coding RNA gene	Chr5:131861106-131864092 (-)
CAST/EiJ	MGP_CASTEiJ_G0014932	unclassified non-coding RNA gene	Chr5:142484122-142487230 (-)
CBA/J	MGP_CBAJ_G0015357	unclassified non-coding RNA gene	Chr5:155573300-155576417 (-)
DBA/2J	MGP_DBA2J_G0015451	unclassified non-coding RNA gene	Chr5:137816488-137819605 (-)
FVB/NJ	MGP_FVBNJ_G0015458	unclassified non-coding RNA gene	Chr5:136912684-136915801 (-)
LP/J	MGP_LPJ_G0015532	unclassified non-coding RNA gene	Chr5:144720034-144723151 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015481	unclassified non-coding RNA gene	Chr5:158266261-158269378 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016050	unclassified non-coding RNA gene	Chr5:142110018-142113135 (-)
PWK/PhJ	MGP_PWKPhJ_G0014717	unclassified non-coding RNA gene	Chr5:136806576-136809696 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014505	unclassified non-coding RNA gene	Chr5:139793475-139796582 (-)
WSB/EiJ	MGP_WSBEiJ_G0015036	unclassified non-coding RNA gene	Chr5:142870726-142873916 (-)

Homology

• Gene Tree
  Gm15672
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000086873 (Evidence)
• NCBI Gene
  105242543

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086873	Ensembl Gene Model | MGI Sequence Detail	3118	C57BL/6J
transcript	ENSMUST00000151512	Ensembl | MGI Sequence Detail	1354	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15672:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54135	Chr5:139136414-139136478 (-)	2 bp