Gm15728 Gene Detail

Summary

• Symbol
  Gm15728
• Name
  predicted gene 15728

• Feature Type
  lncRNA gene
• IDs
  MGI:3783171
  NCBI Gene: 102632031
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:117527187-117529525 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 56.88 cM

Strain
Comparison

• SNPs within 2kb
  184 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783171	lncRNA gene	Chr5:117527187-117531563 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006781	lincRNA gene	Chr5:120477264-120481627 (+)
A/J	MGP_AJ_G0006775	lincRNA gene	Chr5:115572732-115577094 (+)
AKR/J	MGP_AKRJ_G0006745	lincRNA gene	Chr5:119309237-119313765 (+)
BALB/cJ	MGP_BALBcJ_G0006751	lincRNA gene	Chr5:116992202-116996559 (+)
C3H/HeJ	MGP_C3HHeJ_G0006696	lincRNA gene	Chr5:119826018-119831066 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006916	lincRNA gene	Chr5:125056252-125060611 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006171	lincRNA gene	Chr5:110332933-110337427 (+)
CAST/EiJ	MGP_CASTEiJ_G0006619	lincRNA gene	Chr5:118832496-118836859 (+)
CBA/J	MGP_CBAJ_G0006678	lincRNA gene	Chr5:129882491-129886849 (+)
DBA/2J	MGP_DBA2J_G0006698	lincRNA gene	Chr5:115671712-115676068 (+)
FVB/NJ	MGP_FVBNJ_G0006722	lincRNA gene	Chr5:114535491-114539852 (+)
LP/J	MGP_LPJ_G0006782	lincRNA gene	Chr5:120973753-120978281 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006706	lincRNA gene	Chr5:134100523-134104882 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006918	lincRNA gene	Chr5:118835212-118839568 (+)
PWK/PhJ	MGP_PWKPhJ_G0006558	lincRNA gene	Chr5:114364496-114368797 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006464	lincRNA gene	Chr5:116397812-116402321 (+)
WSB/EiJ	MGP_WSBEiJ_G0006670	lincRNA gene	Chr5:119406292-119410651 (+)

Homology

• Gene Tree
  Gm15728
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  1
• Gene trapped
  8
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15728
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000086075 (Evidence)
• NCBI Gene
  102632031

Representative Sequences			Length	Strain/Species
genomic	102632031	NCBI Gene Model | MGI Sequence Detail	2339	C57BL/6J
transcript	NR_166496	RefSeq | MGI Sequence Detail	1471	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm15728:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48387	Chr5:117527180-117527246 (+)	26 bp