Gm15779 Pseudogene Detail

Summary

• Symbol
  Gm15779
• Name
  predicted gene 15779
• Synonyms
  EG667138

• Feature Type
  pseudogene
• IDs
  MGI:3783221
  NCBI Gene: 108169179
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:148905413-148905824 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 78.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783221	pseudogene	Chr6:148905395-148905860 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013776	pseudogene	Chr6:154117696-154118107 (+)
A/J	MGP_AJ_G0013771	pseudogene	Chr6:148006580-148006991 (+)
AKR/J	MGP_AKRJ_G0013725	pseudogene	Chr6:152422139-152422550 (+)
BALB/cJ	MGP_BALBcJ_G0013753	pseudogene	Chr6:147760183-147760594 (+)
C3H/HeJ	MGP_C3HHeJ_G0013581	pseudogene	Chr6:152474898-152475309 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014146	pseudogene	Chr6:158223899-158224310 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012090	pseudogene	Chr6:146720478-146720882 (+)
CAST/EiJ	MGP_CASTEiJ_G0013265	pseudogene	Chr6:152147589-152148000 (+)
CBA/J	MGP_CBAJ_G0013557	pseudogene	Chr6:164303396-164303807 (+)
DBA/2J	MGP_DBA2J_G0013637	pseudogene	Chr6:146794620-146795031 (+)
FVB/NJ	MGP_FVBNJ_G0013636	pseudogene	Chr6:145484392-145484803 (+)
LP/J	MGP_LPJ_G0013721	pseudogene	Chr6:154261727-154262138 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013651	pseudogene	Chr6:167939240-167939651 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014128	pseudogene	Chr6:152266559-152266970 (+)
PWK/PhJ	MGP_PWKPhJ_G0013077	pseudogene	Chr6:145319375-145319895 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012853	pseudogene	Chr6:150364796-150365207 (+)
WSB/EiJ	MGP_WSBEiJ_G0013324	pseudogene	Chr6:152884548-152884959 (+)

Homology

• Gene Tree
  Gm15779
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082633 (Evidence)
• NCBI Gene
  108169179

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082633	Ensembl Gene Model | MGI Sequence Detail	412	C57BL/6J
transcript	ENSMUST00000117470	Ensembl | MGI Sequence Detail	412	Not Applicable

Other
Accession IDs

MGI:3644676

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9