Gm15786 Pseudogene Detail

Summary

• Symbol
  Gm15786
• Name
  predicted gene 15786
• Synonyms
  EG665441

• Feature Type
  pseudogene
• IDs
  MGI:3783228
  NCBI Gene: 665441
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:149303291-149303740 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 78.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783228	pseudogene	Chr6:149303167-149304500 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013780	pseudogene	Chr6:154543182-154543631 (+)
A/J	MGP_AJ_G0013775	pseudogene	Chr6:148420001-148420450 (+)
AKR/J	MGP_AKRJ_G0013729	pseudogene	Chr6:152839027-152839618 (+)
BALB/cJ	MGP_BALBcJ_G0013757	pseudogene	Chr6:148169891-148170762 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0014151	pseudogene	Chr6:158657184-158657633 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012093	pseudogene	Chr6:147117686-147118521 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013561	pseudogene	Chr6:164759244-164759694 (+)
DBA/2J	MGP_DBA2J_G0013641	pseudogene	Chr6:147209572-147210335 (+)
FVB/NJ	MGP_FVBNJ_G0013640	pseudogene	Chr6:145887646-145888095 (+)
LP/J	MGP_LPJ_G0013725	pseudogene	Chr6:154661540-154661978 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013655	pseudogene	Chr6:168381523-168381972 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014132	pseudogene	Chr6:152735837-152739447 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0012857	pseudogene	Chr6:150783335-150783787 (+)
WSB/EiJ	MGP_WSBEiJ_G0013328	pseudogene	Chr6:153315945-153316394 (+)

Homology

• Gene Tree
  Gm15786
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000081335 (Evidence)
• NCBI Gene
  665441

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081335	Ensembl Gene Model | MGI Sequence Detail	450	C57BL/6J
transcript	ENSMUST00000121079	Ensembl | MGI Sequence Detail	450	Not Applicable

Other
Accession IDs

MGI:3646545

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15786:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2063	Chr6:149303165-149303183 (+)	-117 bp