Gm15787 Gene Detail

Summary

• Symbol
  Gm15787
• Name
  predicted gene 15787

• Feature Type
  lncRNA gene
• IDs
  MGI:3783229
  NCBI Gene: 100504007
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:110315374-110324370 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 53.34 cM

Strain
Comparison

• SNPs within 2kb
  308 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783229	lncRNA gene	Chr5:110302266-110324370 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015610	unclassified non-coding RNA gene	Chr5:112597340-112619533 (-)
A/J	MGP_AJ_G0015586	unclassified non-coding RNA gene	Chr5:108232277-108258022 (-)
AKR/J	MGP_AKRJ_G0015550	unclassified non-coding RNA gene	Chr5:111680331-111703759 (-)
BALB/cJ	MGP_BALBcJ_G0015548	unclassified non-coding RNA gene	Chr5:109602449-109624581 (-)
C3H/HeJ	MGP_C3HHeJ_G0015370	unclassified non-coding RNA gene	Chr5:112104542-112130212 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016002	unclassified non-coding RNA gene	Chr5:117040326-117063357 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013737	unclassified non-coding RNA gene	Chr5:103060800-103084189 (-)
CAST/EiJ	MGP_CASTEiJ_G0014926	unclassified non-coding RNA gene	Chr5:110970479-110993529 (-)
CBA/J	MGP_CBAJ_G0015351	unclassified non-coding RNA gene	Chr5:121442345-121464692 (-)
DBA/2J	MGP_DBA2J_G0015445	unclassified non-coding RNA gene	Chr5:108302593-108324942 (-)
FVB/NJ	MGP_FVBNJ_G0015452	unclassified non-coding RNA gene	Chr5:106978532-107000416 (-)
LP/J	MGP_LPJ_G0015526	unclassified non-coding RNA gene	Chr5:113160009-113181838 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015475	unclassified non-coding RNA gene	Chr5:126096472-126120471 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016044	unclassified non-coding RNA gene	Chr5:111112813-111135194 (-)
PWK/PhJ	MGP_PWKPhJ_G0014711	unclassified non-coding RNA gene	Chr5:106891093-106914149 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014499	unclassified non-coding RNA gene	Chr5:108579912-108603411 (-)
WSB/EiJ	MGP_WSBEiJ_G0015030	unclassified non-coding RNA gene	Chr5:111560316-111581747 (-)

Homology

• Gene Tree
  Gm15787
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15787
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  14

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2

• Ensembl
  ENSMUSG00000086247 (Evidence)
• NCBI Gene
  100504007

Representative Sequences			Length	Strain/Species
genomic	100504007	NCBI Gene Model | MGI Sequence Detail	8997	C57BL/6J
transcript	NR_040430	RefSeq | MGI Sequence Detail	1310	ZRU/MplStud

Molecular
Reagents

• All nucleic 14

  cDNA 14

References

• Summaries
  All 15

  Phenotypes 7
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm15787:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52496	Chr5:110324363-110324378 (-)	-1 bp
Tssr52495	Chr5:110324315-110324329 (-)	48 bp