Gm16089 Pseudogene Detail

Summary

• Symbol
  Gm16089
• Name
  predicted gene 16089

• Feature Type
  pseudogene
• IDs
  MGI:3801884
  NCBI Gene: 100504640
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:137613889-137614224 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 76.59 cM

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801884	pseudogene	Chr5:137613873-137614355 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013283	pseudogene	Chr5:142391850-142392184 (+)
A/J	MGP_AJ_G0013263	pseudogene	Chr5:136180560-136180830 (+)
AKR/J	MGP_AKRJ_G0013229	pseudogene	Chr5:140610467-140610801 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009459	pseudogene	Chr10:113081792-113082127 (-)
CAST/EiJ	MGP_CASTEiJ_G0012814	pseudogene	Chr5:140662747-140663098 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013143	pseudogene	Chr5:135289704-135289987 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013612	pseudogene	Chr5:140460096-140460430 (+)
PWK/PhJ	MGP_PWKPhJ_G0012627	pseudogene	Chr5:135172881-135173215 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012417	pseudogene	Chr5:138020727-138021062 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm16089
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000081228 (Evidence)
• NCBI Gene
  100504640

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081228	Ensembl Gene Model | MGI Sequence Detail	336	C57BL/6J
transcript	ENSMUST00000117679	Ensembl | MGI Sequence Detail	336	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16089:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49351	Chr5:137613872-137613883 (+)	-11 bp