Gm15935 Gene Detail

Summary

• Symbol
  Gm15935
• Name
  predicted gene 15935

• Feature Type
  lncRNA gene
• IDs
  MGI:3801894
  NCBI Gene: 118568113
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:21795000-21796705 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 11.86 cM

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801894	lncRNA gene	Chr14:21791611-21796705 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003225	antisense lncRNA gene	Chr14:14583572-14588676 (+)
A/J	MGP_AJ_G0003201	antisense lncRNA gene	Chr14:14199916-14205005 (+)
AKR/J	MGP_AKRJ_G0003183	antisense lncRNA gene	Chr14:14764798-14769887 (+)
BALB/cJ	MGP_BALBcJ_G0003188	antisense lncRNA gene	Chr14:14306881-14311970 (+)
C3H/HeJ	MGP_C3HHeJ_G0003144	antisense lncRNA gene	Chr14:14689847-14694936 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003331	antisense lncRNA gene	Chr14:15064821-15069910 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002857	antisense lncRNA gene	Chr14:14514272-14519437 (+)
CAST/EiJ	MGP_CASTEiJ_G0003110	antisense lncRNA gene	Chr14:14496284-14503538 (+)
CBA/J	MGP_CBAJ_G0003141	antisense lncRNA gene	Chr14:15838983-15844087 (+)
DBA/2J	MGP_DBA2J_G0003146	antisense lncRNA gene	Chr14:14035415-14040519 (+)
FVB/NJ	MGP_FVBNJ_G0003164	antisense lncRNA gene	Chr14:13922705-13927809 (+)
LP/J	MGP_LPJ_G0003222	antisense lncRNA gene	Chr14:14791872-14796976 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003155	antisense lncRNA gene	Chr14:15592408-15597512 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003332	antisense lncRNA gene	Chr14:14544586-14549703 (+)
PWK/PhJ	MGP_PWKPhJ_G0003068	antisense lncRNA gene	Chr14:13622280-13627554 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003014	antisense lncRNA gene	Chr14:14361746-14366928 (+)
WSB/EiJ	MGP_WSBEiJ_G0003144	antisense lncRNA gene	Chr14:14537610-14542722 (+)

Homology

• Gene Tree
  Gm15935
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000084940 (Evidence)
• NCBI Gene
  118568113

Representative Sequences			Length	Strain/Species
genomic	118568113	NCBI Gene Model | MGI Sequence Detail	1706	C57BL/6J
transcript	XR_004938528	RefSeq | MGI Sequence Detail	699	C57BL/6J

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15935:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124445	Chr14:21795554-21795580 (+)	567 bp