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Hopxos Gene Detail
Summary
  • Symbol
    Hopxos
  • Name
    HOP homeobox, opposite strand
  • Synonyms
    Gm15830
Location &
Maps
more
  • Sequence Map
    Chr5:77246086-77250160 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 41.45 cM
Strain
Comparison
more
  • SNPs within 2kb
    264 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3801917
 antisense lncRNA gene Chr5:77242379-77250160 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004105
 antisense lncRNA gene Chr5:77318640-77327792 (+)
A/J MGP_AJ_G0004086
 antisense lncRNA gene Chr5:74357297-74365074 (+)
AKR/J MGP_AKRJ_G0004064
 antisense lncRNA gene Chr5:76794354-76803047 (+)
BALB/cJ MGP_BALBcJ_G0004072
 antisense lncRNA gene Chr5:75096525-75104273 (+)
C3H/HeJ MGP_C3HHeJ_G0004018
 antisense lncRNA gene Chr5:77159824-77168214 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004220
 antisense lncRNA gene Chr5:80413879-80421653 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003697
 antisense lncRNA gene Chr5:69981586-69990020 (+)
CAST/EiJ MGP_CASTEiJ_G0003981
 antisense lncRNA gene Chr5:76376101-76383891 (+)
CBA/J MGP_CBAJ_G0004012
 antisense lncRNA gene Chr5:83062937-83073410 (+)
DBA/2J MGP_DBA2J_G0004027
 antisense lncRNA gene Chr5:74420849-74429081 (+)
FVB/NJ MGP_FVBNJ_G0004046
 antisense lncRNA gene Chr5:73620267-73628597 (+)
LP/J MGP_LPJ_G0004107
 antisense lncRNA gene Chr5:77752516-77760947 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004035
 antisense lncRNA gene Chr5:86189822-86197555 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004216
 antisense lncRNA gene Chr5:76346268-76354907 (+)
PWK/PhJ MGP_PWKPhJ_G0003934
 antisense lncRNA gene Chr5:73437349-73445161 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003879
 antisense lncRNA gene Chr5:75703068-75716015 (+)
WSB/EiJ MGP_WSBEiJ_G0004016
 antisense lncRNA gene Chr5:76668629-76676374 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    2
  • Gene trapped
    4
  • Spontaneous
    1
  • Genomic Mutations
    3 involving Hopxos
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 102637820 NCBI Gene Model | MGI Sequence Detail 4075 C57BL/6J ±  kb
transcript XR_880408 RefSeq | MGI Sequence Detail 982 C57BL/6J  
For the selected sequence
References
more
  • Summaries
    All 11
    Phenotypes 5
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory