Gm16096 Gene Detail

Summary

• Symbol
  Gm16096
• Name
  predicted gene 16096

• Feature Type
  lncRNA gene
• IDs
  MGI:3801985
  NCBI Gene: 102639005
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr9:40692038-40695477 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 21.52 cM

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801985	lncRNA gene	Chr9:40692038-40695477 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015735	unclassified non-coding RNA gene	Chr9:39015720-39019088 (-)
A/J	MGP_AJ_G0015712	unclassified non-coding RNA gene	Chr9:38013817-38017177 (-)
AKR/J	MGP_AKRJ_G0015676	unclassified non-coding RNA gene	Chr9:38733711-38737088 (-)
BALB/cJ	MGP_BALBcJ_G0015673	unclassified non-coding RNA gene	Chr9:37761854-37765223 (-)
C3H/HeJ	MGP_C3HHeJ_G0015495	unclassified non-coding RNA gene	Chr9:39249201-39252564 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016129	unclassified non-coding RNA gene	Chr9:40249148-40252582 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013855	unclassified non-coding RNA gene	Chr9:37642465-37645804 (-)
CAST/EiJ	MGP_CASTEiJ_G0015050	unclassified non-coding RNA gene	Chr9:38974185-38977553 (-)
CBA/J	MGP_CBAJ_G0015475	unclassified non-coding RNA gene	Chr9:41651835-41655189 (-)
DBA/2J	MGP_DBA2J_G0015573	unclassified non-coding RNA gene	Chr9:37954173-37957529 (-)
FVB/NJ	MGP_FVBNJ_G0015578	unclassified non-coding RNA gene	Chr9:37176672-37180050 (-)
LP/J	MGP_LPJ_G0015653	unclassified non-coding RNA gene	Chr9:39297779-39301192 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015601	unclassified non-coding RNA gene	Chr9:43693975-43697337 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016171	unclassified non-coding RNA gene	Chr9:38652432-38655800 (-)
PWK/PhJ	MGP_PWKPhJ_G0014831	unclassified non-coding RNA gene	Chr9:37761401-37764789 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014619	unclassified non-coding RNA gene	Chr9:38887169-38890448 (-)
WSB/EiJ	MGP_WSBEiJ_G0015154	unclassified non-coding RNA gene	Chr9:38680116-38683471 (-)

Homology

• Gene Tree
  Gm16096
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  35
• Gene trapped
  35
• Find Mice (IMSR)
  31 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000087135 (Evidence)
• NCBI Gene
  102639005

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087135	Ensembl Gene Model | MGI Sequence Detail	3440	C57BL/6J
transcript	ENSMUST00000149386	Ensembl | MGI Sequence Detail	819	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16096:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr88971	Chr9:40695436-40695452 (-)	33 bp
Tssr88970	Chr9:40695337-40695343 (-)	137 bp
Tssr88969	Chr9:40694946-40694957 (-)	525 bp
Tssr88968	Chr9:40694351-40694401 (-)	1,101 bp