Gm15850 Gene Detail

Summary

• Symbol
  Gm15850
• Name
  predicted gene 15850

• Feature Type
  lncRNA gene
• IDs
  MGI:3801986
  NCBI Gene: 329253
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:136055457-136058921 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 59.61 cM

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801986	lncRNA gene	Chr1:136053916-136058972 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015113	unclassified non-coding RNA gene	Chr1:139927712-139932667 (-)
A/J	MGP_AJ_G0015086	unclassified non-coding RNA gene	Chr1:134632939-134638526 (-)
AKR/J	MGP_AKRJ_G0015049	unclassified non-coding RNA gene	Chr1:138637500-138642569 (-)
BALB/cJ	MGP_BALBcJ_G0015049	unclassified non-coding RNA gene	Chr1:134962688-134967655 (-)
C3H/HeJ	MGP_C3HHeJ_G0014872	unclassified non-coding RNA gene	Chr1:138732116-138737076 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015506	unclassified non-coding RNA gene	Chr1:144955375-144960350 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013252	unclassified non-coding RNA gene	Chr1:127735894-127741326 (-)
CAST/EiJ	MGP_CASTEiJ_G0014427	unclassified non-coding RNA gene	Chr1:137826107-137831091 (-)
CBA/J	MGP_CBAJ_G0014851	unclassified non-coding RNA gene	Chr1:149980492-149985473 (-)
DBA/2J	MGP_DBA2J_G0014944	unclassified non-coding RNA gene	Chr1:133628073-133633118 (-)
FVB/NJ	MGP_FVBNJ_G0014956	unclassified non-coding RNA gene	Chr1:132274278-132279259 (-)
LP/J	MGP_LPJ_G0015027	unclassified non-coding RNA gene	Chr1:141156003-141160948 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014983	unclassified non-coding RNA gene	Chr1:155616363-155621344 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015544	unclassified non-coding RNA gene	Chr1:138402001-138406972 (-)
PWK/PhJ	MGP_PWKPhJ_G0014219	unclassified non-coding RNA gene	Chr1:132672327-132677378 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014008	unclassified non-coding RNA gene	Chr1:137389203-137394080 (-)
WSB/EiJ	MGP_WSBEiJ_G0014530	unclassified non-coding RNA gene	Chr1:138446108-138451079 (-)

Homology

• Gene Tree
  Gm15850
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm15850
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  712
• Tissues
  1
• cDNA Data
  7
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  4

• Ensembl
  ENSMUSG00000086264 (Evidence)
• NCBI Gene
  329253

Representative Sequences			Length	Strain/Species
genomic	329253	NCBI Gene Model | MGI Sequence Detail	3465	C57BL/6J
transcript	NR_046167	RefSeq | MGI Sequence Detail	508	C57BL/6

Molecular
Reagents

• All nucleic 7

  cDNA 7

References

• Summaries
  All 13

  Developmental Gene Expression 1

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm15850:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13915	Chr1:136060783-136060806 (-)	-1,874 bp
Tssr13914	Chr1:136058913-136058923 (-)	3 bp