Gm15964 Gene Detail

Summary

• Symbol
  Gm15964
• Name
  predicted gene 15964

• Feature Type
  lncRNA gene
• IDs
  MGI:3802003
  NCBI Gene: 100503130
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:91408356-91420749 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 53.16 cM

Strain
Comparison

• SNPs within 2kb
  405 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802003	lncRNA gene	Chr16:91408356-91420749 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015329	unclassified non-coding RNA gene	Chr16:92639510-92651903 (+)
A/J	MGP_AJ_G0015304	unclassified non-coding RNA gene	Chr16:88304508-88316845 (+)
AKR/J	MGP_AKRJ_G0015267	unclassified non-coding RNA gene	Chr16:90974973-90987315 (+)
BALB/cJ	MGP_BALBcJ_G0015267	unclassified non-coding RNA gene	Chr16:88831259-88843647 (+)
C3H/HeJ	MGP_C3HHeJ_G0015091	unclassified non-coding RNA gene	Chr16:91548984-91561372 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015721	unclassified non-coding RNA gene	Chr16:95629697-95642090 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013463	unclassified non-coding RNA gene	Chr16:86000664-86013782 (+)
CAST/EiJ	MGP_CASTEiJ_G0014642	unclassified non-coding RNA gene	Chr16:92110796-92123488 (+)
CBA/J	MGP_CBAJ_G0015070	unclassified non-coding RNA gene	Chr16:99713788-99726468 (+)
DBA/2J	MGP_DBA2J_G0015165	unclassified non-coding RNA gene	Chr16:88208744-88221081 (+)
FVB/NJ	MGP_FVBNJ_G0015172	unclassified non-coding RNA gene	Chr16:87334009-87346346 (+)
LP/J	MGP_LPJ_G0015245	unclassified non-coding RNA gene	Chr16:92339864-92352206 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015198	unclassified non-coding RNA gene	Chr16:104260043-104272385 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015761	unclassified non-coding RNA gene	Chr16:91495017-91507405 (+)
PWK/PhJ	MGP_PWKPhJ_G0014432	unclassified non-coding RNA gene	Chr16:88385695-88398463 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014219	unclassified non-coding RNA gene	Chr16:91053868-91066280 (+)
WSB/EiJ	MGP_WSBEiJ_G0014749	unclassified non-coding RNA gene	Chr16:91734527-91746869 (+)

Homology

• Gene Tree
  Gm15964
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  70 phenotype references
  

• All Mutations and Alleles
  9
• Gene trapped
  1
• Spontaneous
  1
• Targeted
  6
• Genomic Mutations
  8 involving Gm15964
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085337 (Evidence)
• NCBI Gene
  100503130

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085337	Ensembl Gene Model | MGI Sequence Detail	12394	C57BL/6J
transcript	ENSMUST00000138207	Ensembl | MGI Sequence Detail	2745	Not Applicable

References

• Summaries
  All 75

  Diseases 4

  Phenotypes 70
• Earliest
  J:42265 Huang TT, et al., Superoxide-mediated cytotoxicity in superoxide dismutase-deficient fetal fibroblasts. Arch Biochem Biophys. 1997 Aug 15;344(2):424-32
• Latest
  J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077

TSS for Gm15964:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139421	Chr16:91408379-91408425 (+)	46 bp