Gm16077 Pseudogene Detail

Summary

• Symbol
  Gm16077
• Name
  predicted gene 16077
• Synonyms
  Gm300, LOC383057

• Feature Type
  pseudogene
• IDs
  MGI:3802018
  NCBI Gene: 100417977
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:5122029-5122683 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 1.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802018	pseudogene	Chr15:5121978-5122727 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010998	pseudogene	Chr15:2114999-2119067 (+)
DBA/2J	MGP_DBA2J_G0011044	pseudogene	Chr15:1940386-1942445 (+)
FVB/NJ	MGP_FVBNJ_G0011048	pseudogene	Chr15:1877263-1878921 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0011390	pseudogene	Chr15:1979272-1979877 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm16077
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  2

• Ensembl
  ENSMUSG00000080720 (Evidence)
• NCBI Gene
  100417977

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080720	Ensembl Gene Model | MGI Sequence Detail	655	C57BL/6J
transcript	ENSMUST00000121915	Ensembl | MGI Sequence Detail	655	Not Applicable

Other
Accession IDs

MGI:2685146

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;