Gm15998 Gene Detail

Summary

• Symbol
  Gm15998
• Name
  predicted gene 15998
• Synonyms
  ENSMUSG00000074470

• Feature Type
  lncRNA gene
• IDs
  MGI:3802094
  NCBI Gene: 100038411
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:89222746-89226214 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 39.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802094	lncRNA gene	Chr3:89222746-89227547 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003776	antisense lncRNA gene	Chr3:89524849-89528317 (+)
A/J	MGP_AJ_G0003756	antisense lncRNA gene	Chr3:86561833-86565314 (+)
AKR/J	MGP_AKRJ_G0003733	antisense lncRNA gene	Chr3:88653090-88656569 (+)
BALB/cJ	MGP_BALBcJ_G0003745	antisense lncRNA gene	Chr3:86527997-86531473 (+)
C3H/HeJ	MGP_C3HHeJ_G0003691	antisense lncRNA gene	Chr3:88857515-88860996 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003887	antisense lncRNA gene	Chr3:92910790-92914256 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003390	antisense lncRNA gene	Chr3:82045152-82048760 (+)
CAST/EiJ	MGP_CASTEiJ_G0003655	antisense lncRNA gene	Chr3:89213965-89217419 (+)
CBA/J	MGP_CBAJ_G0003687	antisense lncRNA gene	Chr3:96091474-96094943 (+)
DBA/2J	MGP_DBA2J_G0003697	antisense lncRNA gene	Chr3:85939683-85943149 (+)
FVB/NJ	MGP_FVBNJ_G0003718	antisense lncRNA gene	Chr3:84281745-84285226 (+)
LP/J	MGP_LPJ_G0003777	antisense lncRNA gene	Chr3:90602246-90605697 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003706	antisense lncRNA gene	Chr3:102307071-102311715 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003886	antisense lncRNA gene	Chr3:88407592-88411073 (+)
PWK/PhJ	MGP_PWKPhJ_G0003612	antisense lncRNA gene	Chr3:85816125-85819621 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003554	antisense lncRNA gene	Chr3:87575257-87578697 (+)
WSB/EiJ	MGP_WSBEiJ_G0003691	antisense lncRNA gene	Chr3:88802261-88805984 (+)

Homology

• Gene Tree
  Gm15998
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15998
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000086389 (Evidence)
• NCBI Gene
  100038411

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086389	Ensembl Gene Model | MGI Sequence Detail	3469	C57BL/6J
transcript	ENSMUST00000135144	Ensembl | MGI Sequence Detail	1844	Not Applicable
polypeptide	Q3USU7	UniProt | EBI | MGI Sequence Detail	169	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3642448

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426