Gm16120 Gene Detail

Summary

• Symbol
  Gm16120
• Name
  predicted gene 16120

• Feature Type
  lncRNA gene
• IDs
  MGI:3802132
  NCBI Gene: 105242545
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:140193140-140196506 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 78.89 cM

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802132	lncRNA gene	Chr5:140193140-140196506 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004212	antisense lncRNA gene	Chr5:145259036-145264002 (+)
A/J	MGP_AJ_G0004190	antisense lncRNA gene	Chr5:139079411-139082777 (+)
AKR/J	MGP_AKRJ_G0004171	antisense lncRNA gene	Chr5:143424433-143427796 (+)
BALB/cJ	MGP_BALBcJ_G0004177	antisense lncRNA gene	Chr5:140325160-140328494 (+)
C3H/HeJ	MGP_C3HHeJ_G0004125	antisense lncRNA gene	Chr5:144203249-144206588 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004326	antisense lncRNA gene	Chr5:150645881-150650712 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003800	antisense lncRNA gene	Chr5:132926084-132929471 (+)
CAST/EiJ	MGP_CASTEiJ_G0004087	antisense lncRNA gene	Chr5:143630645-143631855 (+)
CBA/J	MGP_CBAJ_G0004119	antisense lncRNA gene	Chr5:156837004-156842613 (+)
DBA/2J	MGP_DBA2J_G0004135	antisense lncRNA gene	Chr5:138893565-138897257 (+)
FVB/NJ	MGP_FVBNJ_G0004151	antisense lncRNA gene	Chr5:138033740-138037520 (+)
LP/J	MGP_LPJ_G0004213	antisense lncRNA gene	Chr5:145871528-145874856 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004141	antisense lncRNA gene	Chr5:159428084-159433021 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004323	antisense lncRNA gene	Chr5:143259589-143264065 (+)
PWK/PhJ	MGP_PWKPhJ_G0004040	antisense lncRNA gene	Chr5:137914128-137917997 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003984	antisense lncRNA gene	Chr5:140946930-140950259 (+)
WSB/EiJ	MGP_WSBEiJ_G0004123	antisense lncRNA gene	Chr5:144040198-144043525 (+)

Homology

• Gene Tree
  Gm16120
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000087248 (Evidence)
• NCBI Gene
  105242545

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087248	Ensembl Gene Model | MGI Sequence Detail	3367	C57BL/6J
transcript	ENSMUST00000127990	Ensembl | MGI Sequence Detail	808	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm16120:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49537	Chr5:140194586-140194605 (+)	1,456 bp