Gm16023 MGI Mouse Gene Detail - MGI:3802146

Symbol

Gm16023
Name

predicted gene 16023

Feature Type

lncRNA gene
IDs

MGI:3802146
NCBI Gene: 100502734
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr4:155692757-155709214 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 4, 86.65 cM

SNPs within 2kb

612 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802146	lncRNA gene	Chr4:155692754-155709214 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015587	unclassified non-coding RNA gene	Chr4:159951320-159970604 (-)
A/J	MGP_AJ_G0015564	unclassified non-coding RNA gene	Chr4:153228072-153245974 (-)
AKR/J	MGP_AKRJ_G0015528	unclassified non-coding RNA gene	Chr4:157392890-157410398 (-)
BALB/cJ	MGP_BALBcJ_G0015526	unclassified non-coding RNA gene	Chr4:153701323-153718170 (-)
C3H/HeJ	MGP_C3HHeJ_G0015348	unclassified non-coding RNA gene	Chr4:157940747-157958141 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015979	unclassified non-coding RNA gene	Chr4:165635318-165654726 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013714	unclassified non-coding RNA gene	Chr4:145516797-145538524 (-)
CAST/EiJ	MGP_CASTEiJ_G0014903	unclassified non-coding RNA gene	Chr4:155390123-155408290 (-)
CBA/J	MGP_CBAJ_G0015329	unclassified non-coding RNA gene	Chr4:170642995-170661787 (-)
DBA/2J	MGP_DBA2J_G0015422	unclassified non-coding RNA gene	Chr4:153249618-153266286 (-)
FVB/NJ	MGP_FVBNJ_G0015430	unclassified non-coding RNA gene	Chr4:152489518-152505770 (-)
LP/J	MGP_LPJ_G0015503	unclassified non-coding RNA gene	Chr4:159874443-159890866 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015453	unclassified non-coding RNA gene	Chr4:173452677-173468686 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016021	unclassified non-coding RNA gene	Chr4:158018161-158034798 (-)
PWK/PhJ	MGP_PWKPhJ_G0014688	unclassified non-coding RNA gene	Chr4:149387224-149404171 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014476	unclassified non-coding RNA gene	Chr4:152276992-152297206 (-)
WSB/EiJ	MGP_WSBEiJ_G0015008	unclassified non-coding RNA gene	Chr4:158193275-158209690 (-)

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Gene Tree

Gm16023

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

3

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

27
RefSeq

1

Ensembl

ENSMUSG00000086682 (Evidence)
NCBI Gene

100502734

Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000086682	Ensembl Gene Model \| MGI Sequence Detail	16458	C57BL/6J	± kb
	transcript	ENSMUST00000137752	Ensembl \| MGI Sequence Detail	2490	Not Applicable

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All nucleic 3

cDNA 3

Summaries

All 7
Earliest

J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
Latest

J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm16023:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr44959	Chr4:155709190-155709230 (-)	4 bp
Tssr44958	Chr4:155709034-155709091 (-)	151 bp
Tssr44957	Chr4:155709017-155709031 (-)	190 bp
Tssr1400	Chr4:155708811-155708824 (-)	396 bp
Tssr44956	Chr4:155708742-155708778 (-)	454 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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