Gm16280 Gene Detail

Summary

• Symbol
  Gm16280
• Name
  predicted gene 16280
• Synonyms
  ENSMUSG00000080118

• Feature Type
  lncRNA gene
• IDs
  MGI:3809105
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:86744625-86745877 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 43.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3809105	lncRNA gene	Chr10:86744625-86745877 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002889	antisense lncRNA gene	Chr10:87893404-87894656 (+)
A/J	MGP_AJ_G0002866	antisense lncRNA gene	Chr10:84988060-84989312 (+)
AKR/J	MGP_AKRJ_G0002847	antisense lncRNA gene	Chr10:87371638-87372890 (+)
BALB/cJ	MGP_BALBcJ_G0002854	antisense lncRNA gene	Chr10:85250759-85252011 (+)
C3H/HeJ	MGP_C3HHeJ_G0002810	antisense lncRNA gene	Chr10:87373842-87375094 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002997	antisense lncRNA gene	Chr10:90876487-90877739 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002540	antisense lncRNA gene	Chr10:80789148-80791010 (+)
CAST/EiJ	MGP_CASTEiJ_G0002782	antisense lncRNA gene	Chr10:87266341-87267641 (+)
CBA/J	MGP_CBAJ_G0002806	antisense lncRNA gene	Chr10:94652160-94653412 (+)
DBA/2J	MGP_DBA2J_G0002813	antisense lncRNA gene	Chr10:84088815-84090071 (+)
FVB/NJ	MGP_FVBNJ_G0002832	antisense lncRNA gene	Chr10:83358020-83359272 (+)
LP/J	MGP_LPJ_G0002889	antisense lncRNA gene	Chr10:88599274-88600526 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002821	antisense lncRNA gene	Chr10:96205093-96206345 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003000	antisense lncRNA gene	Chr10:87220275-87221527 (+)
PWK/PhJ	MGP_PWKPhJ_G0002740	antisense lncRNA gene	Chr10:84105255-84106507 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002689	antisense lncRNA gene	Chr10:85945042-85946338 (+)
WSB/EiJ	MGP_WSBEiJ_G0002811	antisense lncRNA gene	Chr10:87187161-87188413 (+)

Homology

• Gene Tree
  Gm16280
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16280
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000089881 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089881	Ensembl Gene Model | MGI Sequence Detail	1253	C57BL/6J
transcript	ENSMUST00000162458	Ensembl | MGI Sequence Detail	623	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm16280:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95015	Chr10:86744580-86744590 (+)	-40 bp