Gm10015 Pseudogene Detail

Summary

• Symbol
  Gm10015
• Name
  predicted gene 10015

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3809114
  NCBI Gene: 100502680
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:61817053-61817517 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 30.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3809114	pseudogene	Chr8:61816860-61818658 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014075	pseudogene	Chr8:61287183-61287660 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0014485	pseudogene	Chr8:63621362-63624403 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010195	pseudogene	Chr17:47947388-47947831 (-)
CAST/EiJ	MGP_CASTEiJ_G0013534	pseudogene	Chr8:60434887-60435310 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013940	pseudogene	Chr8:57727320-57727763 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013968	pseudogene	Chr8:68021649-68023823 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014459	pseudogene	Chr8:60615177-60616716 (-)
PWK/PhJ	MGP_PWKPhJ_G0013345	pseudogene	Chr8:57727262-57727746 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013126	pseudogene	Chr8:59582747-59583190 (-)
WSB/EiJ	MGP_WSBEiJ_G0013594	pseudogene	Chr8:60936295-60936731 (-)

Homology

• Gene Tree
  Gm10015
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm10015
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  2

• Ensembl
  ENSMUSG00000056943 (Evidence)
• NCBI Gene
  100502680

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000056943	Ensembl Gene Model | MGI Sequence Detail	465	C57BL/6J
transcript	ENSMUST00000072570	Ensembl | MGI Sequence Detail	465	Not Applicable
polypeptide	XP_036010320	RefSeq | MGI Sequence Detail	215	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;