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Trav9n-1 Gene Detail
Summary
  • Symbol
    Trav9n-1
  • Name
    T cell receptor alpha variable 9N-1
  • Synonyms
    Gm5074
Location &
Maps
more
  • Sequence Map
    Chr14:53339258-53339722 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.22 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    104 from dbSNP Build 142
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3809200
 gene segment Chr14:53339258-53339722 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002610
 pseudogenic gene segment Chr14:47090593-47091112 (+)
A/J MGP_AJ_G0002587
 pseudogenic gene segment Chr14:45952588-45952878 (+)
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002713
 pseudogenic gene segment Chr14:48943984-48944555 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002509
 pseudogenic gene segment Chr14:44092777-44093238 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0002559
 pseudogenic gene segment Chr14:44949035-44949496 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0002548
 pseudogenic gene segment Chr14:50644552-50645089 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002718
 pseudogenic gene segment Chr14:46616960-46617529 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002420
 pseudogenic gene segment Chr14:43085315-43085776 (+)
WSB/EiJ MGP_WSBEiJ_G0002537
 pseudogenic gene segment Chr14:46916531-46916992 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    14
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 279872 NCBI Gene Model | MGI Sequence Detail 465 C57BL/6J ±  kb
For the selected sequence
References
more
  • Summaries
    All 6
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory