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Trav5-1 Gene Detail
Summary
  • Symbol
    Trav5-1
  • Name
    T cell receptor alpha variable 5-1
  • Synonyms
    Gm7124, Trav5-1 T-cell receptor alpha chain V region 5-1
  • Feature Type
    gene segment
  • IDs
    MGI:3815062
    NCBI Gene: 633740
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:52860023-52860539 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.02 cM
Strain
Comparison
more
  • SNPs within 2kb
    73 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3815062
 gene segment Chr14:52860023-52860539 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002520
 gene segment Chr14:46687584-46688100 (+)
A/J MGP_AJ_G0002492
 gene segment Chr14:45467787-45468303 (+)
AKR/J MGP_AKRJ_G0002479
 gene segment Chr14:47112656-47113172 (+)
BALB/cJ MGP_BALBcJ_G0002488
 gene segment Chr14:45571834-45572350 (+)
C3H/HeJ MGP_C3HHeJ_G0002464
 gene segment Chr14:46870983-46871499 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002613
 gene segment Chr14:48746097-48746613 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002218
 gene segment Chr14:44571781-44572292 (+)
CAST/EiJ MGP_CASTEiJ_G0002424
 gene segment Chr14:43839091-43839607 (+)
CBA/J MGP_CBAJ_G0002455
 gene segment Chr14:50248918-50249434 (+)
DBA/2J MGP_DBA2J_G0002461
 gene segment Chr14:45228171-45228687 (+)
FVB/NJ MGP_FVBNJ_G0002475
 gene segment Chr14:44802610-44803126 (+)
LP/J MGP_LPJ_G0002516
 gene segment Chr14:47313684-47314200 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002445
 gene segment Chr14:49666754-49667270 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002609
 gene segment Chr14:46453531-46454047 (+)
PWK/PhJ MGP_PWKPhJ_G0002406
 gene segment Chr14:41981131-41981647 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002339
 gene segment Chr14:42497572-42498088 (+)
WSB/EiJ MGP_WSBEiJ_G0002455
 gene segment Chr14:46776701-46777217 (+)



Homology
more
  • Human Ortholog
    TRAV13-1, T cell receptor alpha variable 13-1
  • Vertebrate Orthologs
    11
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV13-1, T cell receptor alpha variable 13-1
  • Synonyms
    TCRAV13S1, TCRAV8S1, TRAV131
  • Links
    NCBI Gene ID: 28671
    UniProt: A0A0B4J241

  • Chr Location
    14q11.2; chr14:21868839-21869365 (+)  GRCh38
  • Human Ortholog
    TRAV13-2, T cell receptor alpha variable 13-2
  • Synonyms
    TCRAV13S2, TCRAV8S2, TRAV132
  • Links
    NCBI Gene ID: 28670
    UniProt: A0A0B4J235

  • Chr Location
    14q11.2; chr14:21918188-21918756 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 633740 NCBI Gene Model | MGI Sequence Detail 517 C57BL/6J ±  kb
polypeptide A0A075B5Z7 UniProt | EBI | MGI Sequence Detail 114 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051006 T cell receptor variable domain
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 8
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory