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Snord55 Gene Detail
Summary
  • Symbol
    Snord55
  • Name
    small nucleolar RNA, C/D box 55
  • Synonyms
    U39, U55
  • Feature Type
    snoRNA gene
  • IDs
    MGI:3819543
    NCBI Gene: 100216533
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:117012968-117013045 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 53.42 cM
Strain
Comparison
more
  • SNPs within 2kb
    108 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819543
 snoRNA gene Chr4:117012967-117013045 (-)
129S1/SvImJ MGP_129S1SvImJ_G0039215
 snoRNA gene Chr4:118118236-118118314 (-)
A/J MGP_AJ_G0039211
 snoRNA gene Chr4:113566088-113566164 (-)
AKR/J MGP_AKRJ_G0039141
 snoRNA gene Chr4:116046266-116046344 (-)
BALB/cJ MGP_BALBcJ_G0039194
 snoRNA gene Chr4:114196088-114196166 (-)
C3H/HeJ MGP_C3HHeJ_G0038855
 snoRNA gene Chr4:117612225-117612303 (-)
C57BL/6NJ MGP_C57BL6NJ_G0039742
 snoRNA gene Chr4:122679417-122679495 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0036440
 snoRNA gene Chr4:107608805-107608883 (-)
CAST/EiJ MGP_CASTEiJ_G0037988
 snoRNA gene Chr4:114829304-114829382 (-)
CBA/J MGP_CBAJ_G0038826
 snoRNA gene Chr4:126031839-126031917 (-)
DBA/2J MGP_DBA2J_G0039011
 snoRNA gene Chr4:114202249-114202325 (-)
FVB/NJ MGP_FVBNJ_G0038966
 snoRNA gene Chr4:112702016-112702094 (-)
LP/J MGP_LPJ_G0039055
 snoRNA gene Chr4:118298237-118298315 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0038967
 snoRNA gene Chr4:130979444-130979522 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0039841
 snoRNA gene Chr4:117194261-117194339 (-)
PWK/PhJ MGP_PWKPhJ_G0037674
 snoRNA gene Chr4:111000482-111000560 (-)
SPRET/EiJ MGP_SPRETEiJ_G0037423
 snoRNA gene Chr4:113493659-113493737 (-)
WSB/EiJ MGP_WSBEiJ_G0038216
 snoRNA gene Chr4:117064334-117064410 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100216533 NCBI Gene Model | MGI Sequence Detail 78 C57BL/6J ±  kb
transcript NR_030704 RefSeq | MGI Sequence Detail 78 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 8
    Phenotypes 3
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory