Snord99 Gene Detail

Summary

• Symbol
  Snord99
• Name
  small nucleolar RNA, C/D box 99
• Synonyms
  MBII-420

• Feature Type
  snoRNA gene
• IDs
  MGI:3819570
  NCBI Gene: 100217437
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:132038014-132038069 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 65.16 cM

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819570	snoRNA gene	Chr4:132038002-132038075 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039233	snoRNA gene	Chr4:134450528-134450601 (+)
A/J	MGP_AJ_G0039229	snoRNA gene	Chr4:128866589-128866662 (+)
AKR/J	MGP_AKRJ_G0039159	snoRNA gene	Chr4:132485730-132485803 (+)
BALB/cJ	MGP_BALBcJ_G0039212	snoRNA gene	Chr4:129476517-129476590 (+)
C3H/HeJ	MGP_C3HHeJ_G0038873	snoRNA gene	Chr4:132742544-132742617 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039760	snoRNA gene	Chr4:139305557-139305630 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036457	snoRNA gene	Chr4:121943602-121943675 (+)
CAST/EiJ	MGP_CASTEiJ_G0038006	snoRNA gene	Chr4:130818019-130818092 (+)
CBA/J	MGP_CBAJ_G0038844	snoRNA gene	Chr4:142878231-142878304 (+)
DBA/2J	MGP_DBA2J_G0039029	snoRNA gene	Chr4:129289776-129289849 (+)
FVB/NJ	MGP_FVBNJ_G0038984	snoRNA gene	Chr4:128137604-128137677 (+)
LP/J	MGP_LPJ_G0039073	snoRNA gene	Chr4:134609195-134609268 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038985	snoRNA gene	Chr4:147469105-147469178 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039859	snoRNA gene	Chr4:132890494-132890567 (+)
PWK/PhJ	MGP_PWKPhJ_G0037692	snoRNA gene	Chr4:125968868-125968941 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037440	snoRNA gene	Chr4:128761908-128761981 (+)
WSB/EiJ	MGP_WSBEiJ_G0038235	snoRNA gene	Chr4:133075464-133075537 (+)

Homology

• Gene Tree
  Snord99
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Snord99
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000080615 (Evidence)
• NCBI Gene
  100217437

Representative Sequences			Length	Strain/Species
genomic	100217437	NCBI Gene Model | MGI Sequence Detail	56	C57BL/6J
transcript	NR_028537	RefSeq | MGI Sequence Detail	56	Not Specified

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
• Latest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Snord99:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39369	Chr4:132038003-132038008 (+)	-8 bp