F930017D23Rik Gene Detail

Summary

• Symbol
  F930017D23Rik
• Name
  RIKEN cDNA F930017D23 gene
• Synonyms
  F830002L21Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:3822538
  NCBI Gene: 414125
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr10:43469423-43506910 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 23.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1055 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3822538	lncRNA gene	Chr10:43469370-43585664 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017196	protein coding gene	Chr10:42377469-42416577 (+)
A/J	MGP_AJ_G0017174	protein coding gene	Chr10:41197397-41236558 (+)
AKR/J	MGP_AKRJ_G0017134	protein coding gene	Chr10:41815587-41856467 (+)
BALB/cJ	MGP_BALBcJ_G0017135	protein coding gene	Chr10:41237962-41275799 (+)
C3H/HeJ	MGP_C3HHeJ_G0016956	protein coding gene	Chr10:42166229-42203771 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0017595	protein coding gene	Chr10:43684973-43730808 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015290	protein coding gene	Chr10:39140300-39179976 (+)
CAST/EiJ	MGP_CASTEiJ_G0016535	protein coding gene	Chr10:42397080-42441982 (+)
CBA/J	MGP_CBAJ_G0016930	protein coding gene	Chr10:45660899-45703146 (+)
DBA/2J	MGP_DBA2J_G0017036	protein coding gene	Chr10:40652754-40690001 (+)
FVB/NJ	MGP_FVBNJ_G0017031	protein coding gene	Chr10:40148731-40186064 (+)
LP/J	MGP_LPJ_G0017112	protein coding gene	Chr10:42392018-42433094 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017060	protein coding gene	Chr10:46379221-46417915 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017631	protein coding gene	Chr10:41841240-41880692 (+)
PWK/PhJ	MGP_PWKPhJ_G0016314	protein coding gene	Chr10:40538860-40587637 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0016099	protein coding gene	Chr10:41668122-41711831 (+)
WSB/EiJ	MGP_WSBEiJ_G0016598	protein coding gene	Chr10:42108610-42150936 (+)

Homology

• Gene Tree
  F930017D23Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000075184 (Evidence)
• NCBI Gene
  414125

Representative Sequences			Length	Strain/Species
genomic	414125	NCBI Gene Model | MGI Sequence Detail	37488	C57BL/6J
transcript	NR_033558	RefSeq | MGI Sequence Detail	1833	C57BL/6
polypeptide	Q3TZ88	UniProt | EBI | MGI Sequence Detail	69	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3041237

References

• Summaries
  All 11
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for F930017D23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93145	Chr10:43469388-43469399 (+)	-29 bp
Tssr93146	Chr10:43469413-43469442 (+)	5 bp
Tssr93147	Chr10:43479378-43479383 (+)	9,958 bp
Tssr93148	Chr10:43486464-43486473 (+)	17,046 bp
Tssr93149	Chr10:43486505-43486514 (+)	17,087 bp