Gm16277 Gene Detail

Summary

• Symbol
  Gm16277
• Name
  predicted gene 16277

• Feature Type
  lncRNA gene
• IDs
  MGI:3826543
  NCBI Gene: 105246607
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:58192571-58224479 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 54.16 cM

Strain
Comparison

• SNPs within 2kb
  975 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826543	lncRNA gene	Chr19:58192571-58224479 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003489	antisense lncRNA gene	Chr19:58673168-58705043 (+)
A/J	MGP_AJ_G0003469	antisense lncRNA gene	Chr19:55778671-55810377 (+)
AKR/J	MGP_AKRJ_G0003448	antisense lncRNA gene	Chr19:57529683-57563010 (+)
BALB/cJ	MGP_BALBcJ_G0003458	antisense lncRNA gene	Chr19:55851156-55883252 (+)
C3H/HeJ	MGP_C3HHeJ_G0003406	antisense lncRNA gene	Chr19:57765810-57798583 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003596	antisense lncRNA gene	Chr19:60075258-60108298 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003106	antisense lncRNA gene	Chr19:54669525-54702534 (+)
CAST/EiJ	MGP_CASTEiJ_G0003369	antisense lncRNA gene	Chr19:57835220-57868544 (+)
CBA/J	MGP_CBAJ_G0003403	antisense lncRNA gene	Chr19:63013341-63047306 (+)
DBA/2J	MGP_DBA2J_G0003411	antisense lncRNA gene	Chr19:55534508-55566222 (+)
FVB/NJ	MGP_FVBNJ_G0003430	antisense lncRNA gene	Chr19:55265855-55297537 (+)
LP/J	MGP_LPJ_G0003484	antisense lncRNA gene	Chr19:58528986-58562155 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003418	antisense lncRNA gene	Chr19:62261452-62294108 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003599	antisense lncRNA gene	Chr19:57752585-57786514 (+)
PWK/PhJ	MGP_PWKPhJ_G0003325	antisense lncRNA gene	Chr19:55526062-55557995 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003270	antisense lncRNA gene	Chr19:56425012-56459376 (+)
WSB/EiJ	MGP_WSBEiJ_G0003404	antisense lncRNA gene	Chr19:57869250-57900812 (+)

Homology

• Gene Tree
  Gm16277
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087002 (Evidence)
• NCBI Gene
  105246607

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087002	Ensembl Gene Model | MGI Sequence Detail	31909	C57BL/6J
transcript	ENSMUST00000143595	Ensembl | MGI Sequence Detail	662	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm16277:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157252	Chr19:58219535-58219544 (+)	26,969 bp