Gm16283 Gene Detail

Summary

• Symbol
  Gm16283
• Name
  predicted gene 16283

• Feature Type
  lncRNA gene
• IDs
  MGI:3826591
  NCBI Gene: 102635853
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:49888808-49894655 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 27.09 cM

Strain
Comparison

• SNPs within 2kb
  332 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826591	lncRNA gene	Chr18:49888779-49894655 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015364	unclassified non-coding RNA gene	Chr18:48740772-48742168 (+)
A/J	MGP_AJ_G0015338	unclassified non-coding RNA gene	Chr18:46913397-46914778 (+)
AKR/J	MGP_AKRJ_G0015302	unclassified non-coding RNA gene	Chr18:48211267-48212666 (+)
BALB/cJ	MGP_BALBcJ_G0015302	unclassified non-coding RNA gene	Chr18:47038746-47040324 (+)
C3H/HeJ	MGP_C3HHeJ_G0015126	unclassified non-coding RNA gene	Chr18:48338146-48339597 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015756	unclassified non-coding RNA gene	Chr18:50398793-50400180 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013497	unclassified non-coding RNA gene	Chr18:46621816-46623206 (+)
CAST/EiJ	MGP_CASTEiJ_G0014677	unclassified non-coding RNA gene	Chr18:48327907-48329312 (+)
CBA/J	MGP_CBAJ_G0015105	unclassified non-coding RNA gene	Chr18:51839576-51840968 (+)
DBA/2J	MGP_DBA2J_G0015200	unclassified non-coding RNA gene	Chr18:46543374-46544995 (+)
FVB/NJ	MGP_FVBNJ_G0015207	unclassified non-coding RNA gene	Chr18:46107919-46110099 (+)
LP/J	MGP_LPJ_G0015280	unclassified non-coding RNA gene	Chr18:48762000-48764222 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015233	unclassified non-coding RNA gene	Chr18:53364194-53365572 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015795	unclassified non-coding RNA gene	Chr18:48172593-48175585 (+)
PWK/PhJ	MGP_PWKPhJ_G0014467	unclassified non-coding RNA gene	Chr18:46676931-46678335 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014254	unclassified non-coding RNA gene	Chr18:48396828-48398191 (+)
WSB/EiJ	MGP_WSBEiJ_G0014784	unclassified non-coding RNA gene	Chr18:48061591-48062990 (+)

Homology

• Gene Tree
  Gm16283
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  9
• Gene trapped
  8
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm16283
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000087020 (Evidence)
• NCBI Gene
  102635853

Representative Sequences			Length	Strain/Species
genomic	102635853	NCBI Gene Model | MGI Sequence Detail	5848	C57BL/6J
transcript	NR_175825	RefSeq | MGI Sequence Detail	769	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for Gm16283:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150980	Chr18:49888800-49888818 (+)	1 bp
Tssr150981	Chr18:49888833-49888852 (+)	35 bp