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Rtl10 Gene Detail
Summary
  • Symbol
    Rtl10
  • Name
    retrotransposon Gag like 10
  • Synonyms
    Gm16314
Location &
Maps
more
  • Sequence Map
    Chr16:18319883-18320924 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 11.46 cM
Strain
Comparison
more
  • SNPs within 2kb
    5 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3833934
 protein coding gene Chr16:18317651-18320924 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022613
 protein coding gene Chr16:15729355-15732112 (+)
A/J MGP_AJ_G0022574
 protein coding gene Chr16:14947961-14950718 (+)
AKR/J MGP_AKRJ_G0022551
 protein coding gene Chr16:15540913-15543670 (+)
BALB/cJ MGP_BALBcJ_G0022579
 protein coding gene Chr16:15098911-15101668 (+)
C3H/HeJ MGP_C3HHeJ_G0022346
 protein coding gene Chr16:15697551-15700308 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023028
 protein coding gene Chr16:16016478-16019235 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020548
 protein coding gene Chr16:14985814-14988569 (+)
CAST/EiJ MGP_CASTEiJ_G0021873
 protein coding gene Chr16:15600748-15603505 (+)
CBA/J MGP_CBAJ_G0022315
 protein coding gene Chr16:16727554-16730311 (+)
DBA/2J MGP_DBA2J_G0022447
 protein coding gene Chr16:14864312-14867069 (+)
FVB/NJ MGP_FVBNJ_G0022422
 protein coding gene Chr16:14923293-14926050 (+)
LP/J MGP_LPJ_G0022514
 protein coding gene Chr16:15489577-15492334 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022444
 protein coding gene Chr16:16345184-16347941 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023039
 protein coding gene Chr16:15475213-15477970 (+)
PWK/PhJ MGP_PWKPhJ_G0021615
 protein coding gene Chr16:15134134-15136887 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021443
 protein coding gene Chr16:15432506-15435298 (+)
WSB/EiJ MGP_WSBEiJ_G0021919
 protein coding gene Chr16:15470983-15473740 (+)



Human Diseases
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  • References
    5 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    124 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
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  • All Sequences
    23
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000086965 Ensembl Gene Model | MGI Sequence Detail 1042 C57BL/6J ±  kb
transcript ENSMUST00000249347 Ensembl | MGI Sequence Detail 1042 Not Applicable  
For the selected sequence
Molecular
Reagents
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  • Microarray probesets 1
Other
Accession IDs
less
MGI:5883579
References
more
  • Summaries
    All 130
    Diseases 5
    Phenotypes 124
  • Earliest
    J:57757 Lindsay EA, et al., Congenital heart disease in mice deficient for the DiGeorge syndrome region [see comments]. Nature. 1999 Sep 23;401(6751):379-83
  • Latest
    J:351616 Pechous RD, et al., SARS-CoV-2 Infection Causes Heightened Disease Severity and Mortality in a Mouse Model of Down Syndrome. Biomedicines. 2024 Feb 28;12(3)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory