Gm15832 MGI Mouse Gene Detail - MGI:3834078

Symbol

Gm15832
Name

predicted gene 15832

Feature Type

lncRNA gene
IDs

MGI:3834078
Alliance

gene page
Transcription Start Sites

14 TSS

Sequence Map

Chr1:39586651-39591083 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, 18.32 cM

SNPs within 2kb

172 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3834078	lncRNA gene	Chr1:39586651-39591083 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015094	unclassified non-coding RNA gene	Chr1:38294186-38298613 (-)
A/J	MGP_AJ_G0015067	unclassified non-coding RNA gene	Chr1:37223393-37227861 (-)
AKR/J	MGP_AKRJ_G0015030	unclassified non-coding RNA gene	Chr1:37726312-37730617 (-)
BALB/cJ	MGP_BALBcJ_G0015030	unclassified non-coding RNA gene	Chr1:36870956-36875875 (-)
C3H/HeJ	MGP_C3HHeJ_G0014853	unclassified non-coding RNA gene	Chr1:37988105-37992540 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015487	unclassified non-coding RNA gene	Chr1:39891088-39895510 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013234	unclassified non-coding RNA gene	Chr1:34187121-34191730 (-)
CAST/EiJ	MGP_CASTEiJ_G0014408	unclassified non-coding RNA gene	Chr1:37866752-37871152 (-)
CBA/J	MGP_CBAJ_G0014832	unclassified non-coding RNA gene	Chr1:41043455-41048470 (-)
DBA/2J	MGP_DBA2J_G0014925	unclassified non-coding RNA gene	Chr1:36507477-36512357 (-)
FVB/NJ	MGP_FVBNJ_G0014937	unclassified non-coding RNA gene	Chr1:36042615-36047057 (-)
LP/J	MGP_LPJ_G0015008	unclassified non-coding RNA gene	Chr1:38632568-38637005 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014964	unclassified non-coding RNA gene	Chr1:43092255-43096870 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015525	unclassified non-coding RNA gene	Chr1:37844295-37850275 (-)
PWK/PhJ	MGP_PWKPhJ_G0014201	unclassified non-coding RNA gene	Chr1:36323797-36328352 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013990	unclassified non-coding RNA gene	Chr1:37780989-37785754 (-)
WSB/EiJ	MGP_WSBEiJ_G0014512	unclassified non-coding RNA gene	Chr1:37798907-37804918 (-)

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Gene Tree

Gm15832

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

1
Chemically induced (other)

1
Genomic Mutations

1 involving Gm15832
Find Mice (IMSR)

0 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

1

Tissue x Stage Matrix

Other Mouse Links

Expression Atlas

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All Sequences

21

Ensembl

ENSMUSG00000085894 (Evidence)

Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000085894	Ensembl Gene Model \| MGI Sequence Detail	4433	C57BL/6J	± kb
	transcript	ENSMUST00000146314	Ensembl \| MGI Sequence Detail	1832	Not Applicable

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All nucleic 1

cDNA 1

Summaries

All 8

Phenotypes 2
Earliest

J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
Latest

J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15832:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11383	Chr1:39592405-39592448 (-)	-1,344 bp
Tssr11382	Chr1:39591484-39591493 (-)	-406 bp
Tssr11381	Chr1:39591450-39591455 (-)	-370 bp
Tssr11380	Chr1:39591437-39591448 (-)	-360 bp
Tssr11379	Chr1:39591398-39591427 (-)	-330 bp
Tssr11378	Chr1:39591386-39591397 (-)	-309 bp
Tssr11377	Chr1:39591371-39591384 (-)	-295 bp
Tssr11376	Chr1:39591273-39591301 (-)	-204 bp
Tssr11375	Chr1:39591215-39591238 (-)	-144 bp
Tssr11374	Chr1:39591108-39591126 (-)	-34 bp
Tssr11373	Chr1:39591074-39591085 (-)	3 bp
Tssr11372	Chr1:39591053-39591058 (-)	27 bp
Tssr11371	Chr1:39590991-39591000 (-)	87 bp
Tssr11370	Chr1:39590963-39590974 (-)	114 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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