Mir1945 Gene Detail

Summary

• Symbol
  Mir1945
• Name
  microRNA 1945
• Synonyms
  mmu-mir-1945

• Feature Type
  miRNA gene
• IDs
  MGI:3836984
  NCBI Gene: 100316833
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:11072232-11072309 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 6.40 cM

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3836984	miRNA gene	Chr16:11072232-11072309 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0008242	miRNA gene	Chr16:8120732-8120809 (-)
A/J	MGP_AJ_G0008231	miRNA gene	Chr16:7670269-7670346 (-)
AKR/J	MGP_AKRJ_G0008214	miRNA gene	Chr16:8030931-8031008 (-)
BALB/cJ	MGP_BALBcJ_G0008216	miRNA gene	Chr16:7813041-7813118 (-)
C3H/HeJ	MGP_C3HHeJ_G0008158	miRNA gene	Chr16:8099058-8099135 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0008410	miRNA gene	Chr16:8280939-8281016 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007478	miRNA gene	Chr16:7832461-7832538 (-)
CAST/EiJ	MGP_CASTEiJ_G0008029	miRNA gene	Chr16:8120367-8120444 (-)
CBA/J	MGP_CBAJ_G0008127	miRNA gene	Chr16:8632729-8632806 (-)
DBA/2J	MGP_DBA2J_G0008160	miRNA gene	Chr16:7673334-7673411 (-)
FVB/NJ	MGP_FVBNJ_G0008185	miRNA gene	Chr16:7666214-7666291 (-)
LP/J	MGP_LPJ_G0008242	miRNA gene	Chr16:8067285-8067362 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008148	miRNA gene	Chr16:8330666-8330743 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008401	miRNA gene	Chr16:7967243-7967320 (-)
PWK/PhJ	MGP_PWKPhJ_G0007951	miRNA gene	Chr16:7906244-7906321 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007842	miRNA gene	Chr16:8038511-8038588 (-)
WSB/EiJ	MGP_WSBEiJ_G0008106	miRNA gene	Chr16:8056041-8056118 (-)

Homology

• Gene Tree
  Mir1945
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000088544 (Evidence)
• NCBI Gene
  100316833

Representative Sequences			Length	Strain/Species
genomic	100316833	NCBI Gene Model | MGI Sequence Detail	78	C57BL/6J
transcript	NR_035466	RefSeq | MGI Sequence Detail	78	ZRU/MplStud

Other Database
Links

miRBase

MI0009934

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
• Latest
  J:174268 Prosser HM, et al., A resource of vectors and ES cells for targeted deletion of microRNAs in mice. Nat Biotechnol. 2011 Aug 7;29(9):840-5

TSS for Mir1945:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140020	Chr16:11072296-11072312 (-)	5 bp