Mir1969 Gene Detail

Summary

• Symbol
  Mir1969
• Name
  microRNA 1969
• Synonyms
  mmu-mir-1969

• Feature Type
  miRNA gene
• IDs
  MGI:3837216
  NCBI Gene: 100316777
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:71378169-71378262 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 34.43 cM

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3837216	miRNA gene	Chr8:71378169-71378262 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0009111	miRNA gene	Chr8:71243332-71243425 (+)
A/J	MGP_AJ_G0009092	miRNA gene	Chr8:68331891-68331984 (+)
AKR/J	MGP_AKRJ_G0009083	miRNA gene	Chr8:70318685-70318778 (+)
BALB/cJ	MGP_BALBcJ_G0009077	miRNA gene	Chr8:68565355-68565448 (+)
C3H/HeJ	MGP_C3HHeJ_G0009016	miRNA gene	Chr8:70938700-70938793 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0009318	miRNA gene	Chr8:73922184-73922277 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008188	miRNA gene	Chr8:63149852-63149945 (+)
CAST/EiJ	MGP_CASTEiJ_G0008850	miRNA gene	Chr8:70419603-70419696 (+)
CBA/J	MGP_CBAJ_G0008988	miRNA gene	Chr8:76592765-76592858 (+)
DBA/2J	MGP_DBA2J_G0009015	miRNA gene	Chr8:68054891-68054984 (+)
FVB/NJ	MGP_FVBNJ_G0009033	miRNA gene	Chr8:67189984-67190077 (+)
LP/J	MGP_LPJ_G0009111	miRNA gene	Chr8:71262143-71262236 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008998	miRNA gene	Chr8:79221866-79221959 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0009287	miRNA gene	Chr8:70476270-70476363 (+)
PWK/PhJ	MGP_PWKPhJ_G0008778	miRNA gene	Chr8:67350553-67350646 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0008620	miRNA gene	Chr8:69449456-69449549 (+)
WSB/EiJ	MGP_WSBEiJ_G0008945	miRNA gene	Chr8:70837431-70837524 (+)

Homology

• Gene Tree
  Mir1969
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  1 involving Mir1969
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000088248 (Evidence)
• NCBI Gene
  100316777

Representative Sequences			Length	Strain/Species
genomic	100316777	NCBI Gene Model | MGI Sequence Detail	94	C57BL/6J
transcript	NR_035495	RefSeq | MGI Sequence Detail	94	ZRU/MplStud

Other Database
Links

miRBase

MI0009966

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
• Latest
  J:174268 Prosser HM, et al., A resource of vectors and ES cells for targeted deletion of microRNAs in mice. Nat Biotechnol. 2011 Aug 7;29(9):840-5