Pitpnm2os2 Gene Detail

Summary

• Symbol
  Pitpnm2os2
• Name
  phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 2
• Synonyms
  Gm16338

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3840147
  NCBI Gene: 100047482
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:124332970-124338409 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 63.44 cM

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3840147	antisense lncRNA gene	Chr5:124332963-124338409 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004179	antisense lncRNA gene	Chr5:127983706-127989148 (+)
A/J	MGP_AJ_G0004158	antisense lncRNA gene	Chr5:122665843-122671285 (+)
AKR/J	MGP_AKRJ_G0004139	antisense lncRNA gene	Chr5:126612305-126617759 (+)
BALB/cJ	MGP_BALBcJ_G0004144	antisense lncRNA gene	Chr5:123997777-124003217 (+)
C3H/HeJ	MGP_C3HHeJ_G0004092	antisense lncRNA gene	Chr5:127227387-127232841 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004292	antisense lncRNA gene	Chr5:132944108-132949545 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003769	antisense lncRNA gene	Chr5:117198399-117203915 (+)
CAST/EiJ	MGP_CASTEiJ_G0004054	antisense lncRNA gene	Chr5:126340783-126346214 (+)
CBA/J	MGP_CBAJ_G0004086	antisense lncRNA gene	Chr5:138176965-138182419 (+)
DBA/2J	MGP_DBA2J_G0004102	antisense lncRNA gene	Chr5:122684753-122690207 (+)
FVB/NJ	MGP_FVBNJ_G0004118	antisense lncRNA gene	Chr5:121720276-121726462 (+)
LP/J	MGP_LPJ_G0004180	antisense lncRNA gene	Chr5:128538578-128544010 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004108	antisense lncRNA gene	Chr5:141757419-141762965 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004290	antisense lncRNA gene	Chr5:126233527-126239066 (+)
PWK/PhJ	MGP_PWKPhJ_G0004008	antisense lncRNA gene	Chr5:121498975-121504427 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003951	antisense lncRNA gene	Chr5:123884481-123890660 (+)
WSB/EiJ	MGP_WSBEiJ_G0004091	antisense lncRNA gene	Chr5:126903061-126908482 (+)

Homology

• Gene Tree
  Pitpnm2os2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Pitpnm2os2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000089842 (Evidence)
• NCBI Gene
  100047482

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089842	Ensembl Gene Model | MGI Sequence Detail	5440	C57BL/6J
transcript	ENSMUST00000198466	Ensembl | MGI Sequence Detail	2467	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Pitpnm2os2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48851	Chr5:124332923-124332932 (+)	-42 bp
Tssr48852	Chr5:124332957-124332975 (+)	-4 bp