Gm44505 Gene Detail

Summary

• Symbol
  Gm44505
• Name
  predicted readthrough transcript (NMD candidate), 44505
• Synonyms
  U05342, Zfp91-Cntf, Zfp91Cntf

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3845910
  NCBI Gene: 664779
• Alliance
  gene page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr19:12741024-12773490 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 8.73 cM

Strain
Comparison

• SNPs within 2kb
  576 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3845910	protein coding gene	Chr19:12740892-12773490 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm44505
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000118491 (Evidence)
• NCBI Gene
  664779

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118491	Ensembl Gene Model | MGI Sequence Detail	32467	C57BL/6J
transcript	ENSMUST00000142247	Ensembl | MGI Sequence Detail	3221	Not Applicable
polypeptide	ENSMUSP00000124424	Ensembl | MGI Sequence Detail	529	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR036236 Zinc finger C2H2 superfamily
  IPR013087 Zinc finger C2H2-type

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7
• Earliest
  J:23225 Saotome Y, et al., A widely expressed novel C2H2 zinc-finger protein with multiple consensus phosphorylation sites is conserved in mouse and man. Gene. 1995 Jan 23;152(2):233-8
• Latest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86

TSS for Gm44505:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158456	Chr19:12773938-12773969 (-)	-464 bp
Tssr158455	Chr19:12773918-12773932 (-)	-435 bp
Tssr158454	Chr19:12773472-12773510 (-)	-1 bp
Tssr158453	Chr19:12772880-12772931 (-)	584 bp
Tssr158452	Chr19:12772845-12772861 (-)	637 bp
Tssr158451	Chr19:12772788-12772829 (-)	681 bp
Tssr158450	Chr19:12772730-12772741 (-)	754 bp
Tssr158449	Chr19:12772378-12772414 (-)	1,094 bp
Tssr158448	Chr19:12769524-12769527 (-)	3,964 bp
Tssr158447	Chr19:12745118-12745122 (-)	28,370 bp