Gm16533 Pseudogene Detail

Summary

• Symbol
  Gm16533
• Name
  predited gene 16533

• Feature Type
  pseudogene
• IDs
  MGI:4410373
  NCBI Gene: 100379214
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:21449779-21450006 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 6.64 cM

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4410373	pseudogene	Chr1:21449778-21450643 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010026	pseudogene	Chr1:19016262-19057766 (+)
A/J	MGP_AJ_G0010007	pseudogene	Chr1:18769713-18807071 (+)
AKR/J	MGP_AKRJ_G0009990	pseudogene	Chr1:18833363-18896417 (+)
BALB/cJ	MGP_BALBcJ_G0009996	pseudogene	Chr1:18478048-18501533 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0010246	pseudogene	Chr1:19922112-19922339 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0009775	pseudogene	Chr1:18996520-18996729 (+)
CBA/J	MGP_CBAJ_G0009900	pseudogene	Chr1:20380716-20415147 (+)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0010017	pseudogene	Chr1:19286270-19318287 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0009679	pseudogene	Chr1:18084542-18084751 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009497	pseudogene	Chr1:18926147-18926374 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm16533
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000094926 (Evidence)
• NCBI Gene
  100379214

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094926	Ensembl Gene Model | MGI Sequence Detail	228	C57BL/6J
transcript	ENSMUST00000140035	Ensembl | MGI Sequence Detail	228	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;