Gm16534 Gene Detail

Summary

• Symbol
  Gm16534
• Name
  predicted gene 16534

• Feature Type
  lncRNA gene
• IDs
  MGI:4413442
  NCBI Gene: 100504305
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr2:31940098-31954923 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 22.00 cM

Strain
Comparison

• SNPs within 2kb
  463 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4413442	lncRNA gene	Chr2:31940098-31954923 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015412	unclassified non-coding RNA gene	Chr2:30454436-30475288 (-)
A/J	MGP_AJ_G0015387	unclassified non-coding RNA gene	Chr2:29186447-29203066 (-)
AKR/J	MGP_AKRJ_G0015351	unclassified non-coding RNA gene	Chr2:30192196-30211830 (-)
BALB/cJ	MGP_BALBcJ_G0015351	unclassified non-coding RNA gene	Chr2:29310424-29325719 (-)
C3H/HeJ	MGP_C3HHeJ_G0015175	unclassified non-coding RNA gene	Chr2:30108697-30124438 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015805	unclassified non-coding RNA gene	Chr2:31406577-31423872 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013546	unclassified non-coding RNA gene	Chr2:27927715-27942890 (-)
CAST/EiJ	MGP_CASTEiJ_G0014726	unclassified non-coding RNA gene	Chr2:30045155-30062373 (-)
CBA/J	MGP_CBAJ_G0015154	unclassified non-coding RNA gene	Chr2:32566335-32589764 (-)
DBA/2J	MGP_DBA2J_G0015249	unclassified non-coding RNA gene	Chr2:28957301-28975096 (-)
FVB/NJ	MGP_FVBNJ_G0015256	unclassified non-coding RNA gene	Chr2:28816836-28832890 (-)
LP/J	MGP_LPJ_G0015329	unclassified non-coding RNA gene	Chr2:30339929-30359546 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015282	unclassified non-coding RNA gene	Chr2:32258852-32274513 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015844	unclassified non-coding RNA gene	Chr2:30107024-30122648 (-)
PWK/PhJ	MGP_PWKPhJ_G0014515	unclassified non-coding RNA gene	Chr2:28851643-28871888 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014303	unclassified non-coding RNA gene	Chr2:30250380-30267881 (-)
WSB/EiJ	MGP_WSBEiJ_G0014833	unclassified non-coding RNA gene	Chr2:30281497-30297523 (-)

Homology

• Gene Tree
  Gm16534
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000090157 (Evidence)
• NCBI Gene
  100504305

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090157	Ensembl Gene Model | MGI Sequence Detail	14826	C57BL/6J
transcript	ENSMUST00000149300	Ensembl | MGI Sequence Detail	1492	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm16534:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23453	Chr2:31955450-31955469 (-)	-537 bp
Tssr23452	Chr2:31955425-31955449 (-)	-514 bp
Tssr23451	Chr2:31955368-31955375 (-)	-449 bp
Tssr23450	Chr2:31955101-31955131 (-)	-193 bp
Tssr23449	Chr2:31955076-31955095 (-)	-163 bp
Tssr23448	Chr2:31953257-31953271 (-)	1,659 bp
Tssr23447	Chr2:31948672-31948676 (-)	6,249 bp