n-TRcct5 Gene Detail

Summary

• Symbol
  n-TRcct5
• Name
  nuclear encoded tRNA arginine 5 (anticodon CCT)
• Synonyms
  trna1022-ArgCCT

• Feature Type
  tRNA gene
• IDs
  MGI:4413727
  NCBI Gene: 102467469
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:115303807-115303879 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4413727	tRNA gene	Chr11:115303807-115303879 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Gene Ontology
(GO)
Classifications

Sequences &
Gene Models

• All Sequences
  2

• NCBI Gene
  102467469

Representative Sequences			Length	Strain/Species
genomic	102467469	NCBI Gene Model | MGI Sequence Detail	73	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:152375 Chan PP, et al., GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res. 2009 Jan;37(Database issue):D93-7

TSS for n-TRcct5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105862	Chr11:115303646-115303660 (+)	-154 bp