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n-TCgca40 Gene Detail
Summary
  • Symbol
    n-TCgca40
  • Name
    nuclear encoded tRNA cysteine 40 (anticodon GCA)
  • Synonyms
    Trc1, trna166-CysGCA
  • Feature Type
    tRNA gene
  • IDs
    MGI:4413807
    NCBI Gene: 109705
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr6:48141035-48141106 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 23.14 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    115 from dbSNP Build 142
  • Strain Annotations
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4413807
 tRNA gene Chr6:48141035-48141106 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Sequences &
Gene Models
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  • All Sequences
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic 109705 NCBI Gene Model | MGI Sequence Detail 72 C57BL/6J ±  kb
For the selected sequence
Other
Accession IDs
less
MGD-MRK-37156, MGI:108119
References
more
  • Summaries
    All 7
    Gene Ontology 1
  • Earliest
    J:23858 Wood L, et al., Isolation of a mouse genomic clone containing four tRNACys-encoding genes. Gene. 1991 Feb 15;98(2):249-52
  • Latest
    J:152375 Chan PP, et al., GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res. 2009 Jan;37(Database issue):D93-7
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory