Gm16546 Pseudogene Detail

Summary

• Symbol
  Gm16546
• Name
  predicted gene 16546

• Feature Type
  pseudogene
• IDs
  MGI:4414966
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:43195356-43195710 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 22.95 cM

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414966	pseudogene	Chr10:43195356-43195710 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010512	pseudogene	Chr10:42086695-42087049 (+)
A/J	MGP_AJ_G0010506	pseudogene	Chr10:40902326-40902680 (+)
AKR/J	MGP_AKRJ_G0010469	pseudogene	Chr10:41513881-41514235 (+)
BALB/cJ	MGP_BALBcJ_G0010479	pseudogene	Chr10:40949838-40950192 (+)
C3H/HeJ	MGP_C3HHeJ_G0010407	pseudogene	Chr10:41880394-41880748 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010750	pseudogene	Chr10:43363173-43363527 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009419	pseudogene	Chr10:38737293-38737658 (+)
CAST/EiJ	MGP_CASTEiJ_G0010224	pseudogene	Chr10:42093833-42094195 (+)
CBA/J	MGP_CBAJ_G0010373	pseudogene	Chr10:45345290-45345644 (+)
DBA/2J	MGP_DBA2J_G0010406	pseudogene	Chr10:40375477-40375831 (+)
FVB/NJ	MGP_FVBNJ_G0010425	pseudogene	Chr10:39867424-39867778 (+)
LP/J	MGP_LPJ_G0010495	pseudogene	Chr10:42090227-42090581 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010392	pseudogene	Chr10:46073566-46073920 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010719	pseudogene	Chr10:41531840-41532194 (+)
PWK/PhJ	MGP_PWKPhJ_G0010126	pseudogene	Chr10:40256417-40256779 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009940	pseudogene	Chr10:41356903-41357265 (+)
WSB/EiJ	MGP_WSBEiJ_G0010293	pseudogene	Chr10:41811544-41811898 (+)

Homology

• Gene Tree
  Gm16546
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16546
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000089673 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089673	Ensembl Gene Model | MGI Sequence Detail	355	C57BL/6J
transcript	ENSMUST00000159442	Ensembl | MGI Sequence Detail	355	Not Applicable

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm16546:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93130	Chr10:43195304-43195310 (+)	-49 bp