Gm16556 Gene Detail

Summary

• Symbol
  Gm16556
• Name
  predicted gene 16556

• Feature Type
  lncRNA gene
• IDs
  MGI:4414976
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr6:122536999-122547852 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 57.66 cM

Strain
Comparison

• SNPs within 2kb
  390 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414976	lncRNA gene	Chr6:122536999-122547852 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015647	unclassified non-coding RNA gene	Chr6:125654799-125668421 (-)
A/J	MGP_AJ_G0015623	unclassified non-coding RNA gene	Chr6:120899677-120910487 (-)
AKR/J	MGP_AKRJ_G0015586	unclassified non-coding RNA gene	Chr6:124243026-124253834 (-)
BALB/cJ	MGP_BALBcJ_G0015585	unclassified non-coding RNA gene	Chr6:120587491-120598298 (-)
C3H/HeJ	MGP_C3HHeJ_G0015407	unclassified non-coding RNA gene	Chr6:124190208-124201979 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016038	unclassified non-coding RNA gene	Chr6:128949051-128962284 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013771	unclassified non-coding RNA gene	Chr6:117508080-117519595 (-)
CAST/EiJ	MGP_CASTEiJ_G0014963	unclassified non-coding RNA gene	Chr6:124457282-124468482 (-)
CBA/J	MGP_CBAJ_G0015388	unclassified non-coding RNA gene	Chr6:133985653-133998226 (-)
DBA/2J	MGP_DBA2J_G0015482	unclassified non-coding RNA gene	Chr6:119813755-119826154 (-)
FVB/NJ	MGP_FVBNJ_G0015489	unclassified non-coding RNA gene	Chr6:118764566-118775654 (-)
LP/J	MGP_LPJ_G0015563	unclassified non-coding RNA gene	Chr6:125806735-125818353 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015512	unclassified non-coding RNA gene	Chr6:137947142-137957939 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016080	unclassified non-coding RNA gene	Chr6:124136772-124148624 (-)
PWK/PhJ	MGP_PWKPhJ_G0014746	unclassified non-coding RNA gene	Chr6:118647804-118659247 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014534	unclassified non-coding RNA gene	Chr6:122262265-122273308 (-)
WSB/EiJ	MGP_WSBEiJ_G0015067	unclassified non-coding RNA gene	Chr6:124438896-124451534 (-)

Homology

• Gene Tree
  Gm16556
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000090192 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090192	Ensembl Gene Model | MGI Sequence Detail	10854	C57BL/6J
transcript	ENSMUST00000162608	Ensembl | MGI Sequence Detail	569	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm16556:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr62860	Chr6:122548337-122548379 (-)	-506 bp
Tssr1998	Chr6:122547843-122547855 (-)	3 bp
Tssr62859	Chr6:122547808-122547826 (-)	35 bp
Tssr62858	Chr6:122547708-122547716 (-)	140 bp