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Gm16580 Pseudogene Detail
Summary
  • Symbol
    Gm16580
  • Name
    predicted gene 16580
  • Feature Type
    pseudogene
  • IDs
    MGI:4415000
    NCBI Gene: 100417756
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:26488311-26489355 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 13.10 cM
Strain
Comparison
more
  • SNPs within 2kb
    167 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4415000
 pseudogene Chr17:26488311-26489358 (+)
129S1/SvImJ MGP_129S1SvImJ_G0011335
 pseudogene Chr17:25422723-25423740 (+)
A/J MGP_AJ_G0011320
 pseudogene Chr17:24665020-24666079 (+)
AKR/J MGP_AKRJ_G0011284
 pseudogene Chr17:24776503-24778164 (+)
BALB/cJ MGP_BALBcJ_G0011295
 pseudogene Chr17:24885541-24886706 (+)
C3H/HeJ MGP_C3HHeJ_G0011185
 pseudogene Chr17:25164916-25165848 (+)
C57BL/6NJ MGP_C57BL6NJ_G0011587
 pseudogene Chr17:26482977-26484143 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0011007
 pseudogene Chr17:25087833-25090121 (+)
CBA/J MGP_CBAJ_G0011166
 pseudogene Chr17:27435066-27439379 (+)
DBA/2J MGP_DBA2J_G0011218
 pseudogene Chr17:24257551-24258610 (+)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0011214
 pseudogene Chr17:26997201-26999124 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0011565
 pseudogene Chr17:25132084-25134413 (+)
PWK/PhJ MGP_PWKPhJ_G0010880
 pseudogene Chr17:23029889-23031058 (+)
SPRET/EiJ MGP_SPRETEiJ_G0011456
 pseudogene Chr3:57429163-57430204 (-)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    18
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100417756 NCBI Gene Model | MGI Sequence Detail 1045 C57BL/6J ±  kb
For the selected sequence
References
more
  • Summaries
    All 7
    Phenotypes 3
  • Earliest
    J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
  • Latest
    J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory